View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14379_high_16 (Length: 264)
Name: NF14379_high_16
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14379_high_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 2489489 - 2489586
Alignment:
| Q |
167 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaata |
264 |
Q |
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| T |
2489489 |
acataatattgaaccataaaccctgctggagttttctcctacagtggtttggtaaaatccttggtgatcaaccacatttgaagcaagagaatccaata |
2489586 |
T |
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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 2492770 - 2492867
Alignment:
| Q |
167 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaata |
264 |
Q |
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| T |
2492770 |
acataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaata |
2492867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 2495900 - 2495997
Alignment:
| Q |
167 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaata |
264 |
Q |
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| T |
2495900 |
acataatattgtaccataaagcctgttaggcttttttcctacaatggtttggtaaaatccatggctatcaacgacgtttgaagcaagagaatccaata |
2495997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 4150190 - 4150046
Alignment:
| Q |
6 |
aataagtgtggttacatacaatcacttcaattttccttaattgttatcggtgtctgcatatagatgttggtttcgtgtccggtttgtatgtttgtgttta |
105 |
Q |
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| T |
4150190 |
aataggtgtgatttcatacaatcacatcaattttctttaattgttttcagtgtctacgtatagatgtgggtgccgtgttcggtttgtatgtttgtgtcaa |
4150091 |
T |
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| Q |
106 |
tgtttcataacatttgatataaggtaaaatcaattctatcactct |
150 |
Q |
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| T |
4150090 |
tgtttcatatcatttgatagaaggtaaaatcaattctaacactct |
4150046 |
T |
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