View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14379_high_18 (Length: 209)
Name: NF14379_high_18
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14379_high_18 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 12043004 - 12043169
Alignment:
| Q |
28 |
atttcttgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacacaagttctggtgttaggtttgatattgttgaatctc |
127 |
Q |
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| T |
12043004 |
atttattgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacacaagttctggtgttaggtttgatactgttgaatctc |
12043103 |
T |
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| Q |
128 |
atattgtttctacaccaccagattgcatttaaaatattaatgactgcataagaaagaactaacttg |
193 |
Q |
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| T |
12043104 |
atattgtttctacaccaccagattgcatttaaaatgttaatgactgcataagcaataactaacttg |
12043169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 30355 - 30215
Alignment:
| Q |
35 |
gtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacacaagttctggtgttaggtttgatattgttgaatctcatattgt |
134 |
Q |
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| T |
30355 |
gtggtcaaagatgttaagtttccagatgtagaggtgctggcaacaatcatgttgacacaagttctaaagttaggcttgacatcattgaatctcttattgt |
30256 |
T |
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| Q |
135 |
ttctacaccaccagattgcatttaaaatattaatgactgca |
175 |
Q |
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| T |
30255 |
ttctacaccaccatattacatttagaatgttaatgactgca |
30215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6178449 - 6178414
Alignment:
| Q |
1 |
atgaccaacattcaagaacaatgagagatttcttgt |
36 |
Q |
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| T |
6178449 |
atgaccaacattcaagaacaatgaaagatttcttgt |
6178414 |
T |
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