View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14379_high_2 (Length: 715)

Name: NF14379_high_2
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14379_high_2
NF14379_high_2
[»] chr6 (16 HSPs)
chr6 (16-636)||(6177894-6178520)
chr6 (28-311)||(6174074-6174357)
chr6 (324-415)||(6174556-6174656)
chr6 (130-388)||(23012623-23012889)
chr6 (556-614)||(6171979-6172037)
chr6 (130-332)||(18967864-18968070)
chr6 (31-87)||(13782414-13782470)
chr6 (31-87)||(13789736-13789792)
chr6 (31-87)||(13803991-13804047)
chr6 (30-86)||(15576197-15576253)
chr6 (34-86)||(13194289-13194341)
chr6 (30-86)||(17858937-17858993)
chr6 (30-87)||(6091919-6091976)
chr6 (34-87)||(22727250-22727303)
chr6 (30-74)||(9395432-9395476)
chr6 (30-75)||(8037052-8037097)
[»] scaffold0074 (1 HSPs)
scaffold0074 (130-388)||(27350-27618)
[»] chr4 (11 HSPs)
chr4 (133-332)||(10427267-10427470)
chr4 (30-76)||(30797708-30797754)
chr4 (30-83)||(10450301-10450354)
chr4 (30-78)||(13553465-13553513)
chr4 (30-78)||(20717947-20717995)
chr4 (30-86)||(22219953-22220009)
chr4 (31-76)||(25367735-25367780)
chr4 (30-78)||(47023560-47023608)
chr4 (30-75)||(7023034-7023079)
chr4 (30-87)||(12805767-12805824)
chr4 (31-91)||(33520225-33520286)
[»] chr7 (21 HSPs)
chr7 (130-332)||(16183755-16183961)
chr7 (30-86)||(7143582-7143638)
chr7 (31-76)||(2352143-2352188)
chr7 (30-86)||(21544680-21544736)
chr7 (30-76)||(7152127-7152173)
chr7 (30-87)||(7494499-7494556)
chr7 (30-78)||(9687088-9687136)
chr7 (30-73)||(18497205-18497248)
chr7 (28-78)||(4091354-4091404)
chr7 (28-66)||(9071398-9071436)
chr7 (39-76)||(7325834-7325871)
chr7 (18-87)||(14074479-14074548)
chr7 (18-87)||(14384507-14384576)
chr7 (34-78)||(3401086-3401130)
chr7 (30-70)||(7776367-7776407)
chr7 (30-78)||(18494563-18494611)
chr7 (37-84)||(3094189-3094236)
chr7 (130-164)||(5102715-5102749)
chr7 (279-415)||(5102860-5103002)
chr7 (31-72)||(10925081-10925122)
chr7 (35-72)||(11466915-11466952)
[»] chr1 (10 HSPs)
chr1 (130-332)||(46191218-46191424)
chr1 (30-86)||(27682937-27682993)
chr1 (30-86)||(34522128-34522184)
chr1 (30-86)||(50048254-50048310)
chr1 (30-84)||(17836791-17836845)
chr1 (130-230)||(4130175-4130278)
chr1 (30-78)||(23224632-23224680)
chr1 (30-84)||(11768885-11768939)
chr1 (34-84)||(30676679-30676729)
chr1 (31-76)||(23420485-23420530)
[»] chr3 (10 HSPs)
chr3 (171-332)||(24671187-24671349)
chr3 (171-332)||(4579078-4579240)
chr3 (133-412)||(31204893-31205179)
chr3 (314-414)||(34489587-34489693)
chr3 (20-87)||(25918085-25918152)
chr3 (273-379)||(34469904-34470012)
chr3 (273-415)||(27630395-27630543)
chr3 (31-74)||(8839674-8839717)
chr3 (31-76)||(26419997-26420042)
chr3 (34-83)||(33913400-33913449)
[»] scaffold0171 (2 HSPs)
scaffold0171 (30-88)||(7365-7423)
scaffold0171 (20-80)||(22566-22626)
[»] chr8 (6 HSPs)
chr8 (34-86)||(13803097-13803149)
chr8 (33-86)||(12957567-12957620)
chr8 (31-87)||(26853617-26853673)
chr8 (30-86)||(32240454-32240510)
chr8 (22-77)||(28075666-28075721)
chr8 (31-72)||(18790068-18790109)
[»] chr5 (5 HSPs)
chr5 (30-86)||(11273684-11273740)
chr5 (30-86)||(16617447-16617503)
chr5 (31-86)||(24518959-24519014)
chr5 (30-86)||(20715843-20715899)
chr5 (32-86)||(16621469-16621523)
[»] chr2 (6 HSPs)
chr2 (30-86)||(31000612-31000668)
chr2 (30-87)||(41256207-41256265)
chr2 (31-76)||(17495995-17496040)
chr2 (34-75)||(23854055-23854096)
chr2 (45-86)||(27416083-27416124)
chr2 (131-264)||(30397034-30397170)
[»] scaffold0362 (1 HSPs)
scaffold0362 (34-89)||(9971-10026)
[»] scaffold0386 (2 HSPs)
scaffold0386 (30-78)||(7539-7587)
scaffold0386 (35-86)||(10553-10604)
[»] scaffold0108 (1 HSPs)
scaffold0108 (32-87)||(9909-9964)
[»] scaffold0103 (1 HSPs)
scaffold0103 (30-84)||(36494-36548)


Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 16 - 636
Target Start/End: Original strand, 6177894 - 6178520
Alignment:
16 cctgtgaagaccaaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcagaaactccacaacaaataaggaggaaaaa 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||    
6177894 cctgtgaagacaaaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttgatccatcagaaatcccacaacaaataaggaagaaaaa 6177993  T
116 accacaaggtatgtaagagtagataacttttattaagtgggagaaattacaaaacctctctaaataaaagcatagacaagttaccttctctcttgaaata 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6177994 accacaaggtatgtaagagtagataaattttattaagtgggagaaattacaaaacctctctaaataaaagcatagacaagttaccttctctcttgaaata 6178093  T
216 gagaaatactaacaccagatgaaaccttacaggagaaactctatttccttcctgtatttttcgctcactctccataaactctaattcttattgttgtatt 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
6178094 gagaaatactaacaccagaggaaaccttacaggagaaactctatttccttcctgtatttttcgctcactctccataaactctaattcttgttgttgtgtt 6178193  T
316 actattttatgggatgattgaaatggtgcaaataaacttgatttataggagaggtaaacaatagttccttac----agcaagacacttgtctttcatgca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
6178194 actattttatgggatgattgaaatggtgcaaataaacttgatttataggagaggtaaacaatagttccttacatatagcaagacacttgtctttcatgca 6178293  T
412 aaacttttggttaaatcttattaatctttagtaccctttaaaaagattttataaaaatgtcataagaattggataaagg--nnnnnnnntagtttgaatt 509  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||    
6178294 aaacatttggttaaatcttattaatctttagtaccctttaaaaagattttataaaaatgtcataagaattggataagggaaaaaaaaaatagtttgaatt 6178393  T
510 atagaagatgctcatcaaagacaagaaatctttcattgttcttgaatgttggtcatatgttggaaatattagcttgattgttaaggatcaagaatggatg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
6178394 atagaagatgctcatcaaagacaagaaatctttcattgttcttgaatgttggtcatatgttggaagtattagcttgattgttaaggattaagaatggatg 6178493  T
610 aaattctttcattgaacttcaatagat 636  Q
    |||||||||||||||||||||||||||    
6178494 aaattctttcattgaacttcaatagat 6178520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 28 - 311
Target Start/End: Original strand, 6174074 - 6174357
Alignment:
28 aaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcagaaactccacaacaaataaggaggaaaaaaccacaaggtat 127  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||  |||||||||||||||| ||||||| |||  |||||    
6174074 aaaaacttagtactttgctactttttacgatttgatgcacttgccaatttgatccatcagaaatcccacaacaaataaggaagaaaaaatcacggggtat 6174173  T
128 gtaagagtagataacttttattaagtgggagaaattacaaaacctctctaaataaaagcatagac-aagttaccttctctcttgaaatagagaaatacta 226  Q
    ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||| | || | ||||||||||||||||||||||| ||||||||||    
6174174 gtaagagta-ataactttcattaagtgggagaaattacaagacctctctaaatacaagtagaggcaaagttaccttctctcttgaaataaagaaatacta 6174272  T
227 acaccagatgaaaccttacaggagaaactctatttccttcctgtatttttcgctcactctccataaactctaattcttattgttg 311  Q
    | || ||| ||| ||||| |||||||||| ||||||||| || |||||||| |||||| |||  || ||||||||||| ||||||    
6174273 aaactagaagaatccttataggagaaactatatttcctttctatatttttctctcactatccgcaagctctaattcttgttgttg 6174357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 324 - 415
Target Start/End: Original strand, 6174556 - 6174656
Alignment:
324 atgggatgattgaaatggtgcaaataaacttgat--ttataggagaggtaaacaatagt---tccttaca----gcaagacacttgtctttcatgcaaaa 414  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||   ||||||||    ||||| ||||||| ||||||||||||    
6174556 atgggatgattgaaatggtgcaaataaacttgatatttataggagaggtaaacaatagtagttccttacatatagcaagccacttgtgtttcatgcaaaa 6174655  T
415 c 415  Q
    |    
6174656 c 6174656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 130 - 388
Target Start/End: Original strand, 23012623 - 23012889
Alignment:
130 aagagtagataacttttattaagtgggagaaattacaaaacctctctaaataaaagcatagacaagttac---ct-tctctcttgaaatagagaaatact 225  Q
    ||||||||| |||||| | |||||| |||||||| ||| |||||| |||||| ||  | |||||| ||||   || ||||||||||||||  | ||||||    
23012623 aagagtagagaactttcactaagtgagagaaatttcaagacctctttaaatacaatgagagacaaattactctctctctctcttgaaatatgggaatact 23012722  T
226 aacaccagatgaaaccttacaggagaaactctatttccttcctgtatttttcgctc--actctccataaactctaattcttattgttgtattactatttt 323  Q
    | |||  |  |||||||||||| ||| ||| ||||||||| || |||||||  |||  |||||| | || ||||||||||| ||||||| |||| | ||     
23012723 agcacttggagaaaccttacagaagagactatatttcctttctatatttttttctctaactctcaacaagctctaattcttgttgttgtgttacaacttg 23012822  T
324 atgggatgattgaaatggtgcaaataaacttg--atttataggagaggtaaacaatagttccttaca 388  Q
    ||||||||||  ||||||||||||| | ||||  ||||||| ||||||||| | ||| |||||||||    
23012823 atgggatgataaaaatggtgcaaatgatcttggtatttataagagaggtaatccatatttccttaca 23012889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 614
Target Start/End: Original strand, 6171979 - 6172037
Alignment:
556 tgttggtcatatgttggaaatattagcttgattgttaaggatcaagaatggatgaaatt 614  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
6171979 tgttggtcatatgttggaaaaattagtttgattgttaaggattaagaatggatgaaatt 6172037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 332
Target Start/End: Complemental strand, 18968070 - 18967864
Alignment:
130 aagagtagataacttttattaagtgggaga-aattacaaaac--ctctctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatacta 226  Q
    ||||||||| |||||| | ||||||| ||| |||||||| ||  ||||||||||| ||| | |||||| ||| | |||||| ||||||||   |||||||    
18968070 aagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagcctctctcatgaaataggagaatacta 18967971  T
227 acaccagatgaaaccttacaggagaaactctatttccttcctgtattttt-cgctcactctccataaactctaattcttattgttgtattactattttat 325  Q
    |||| ||  ||||||| ||| |||||||| ||||||||   | ||||||| | ||||||||| | || ||||||||||| ||||||| |||||| || ||    
18967970 acactaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcactctcaacaagctctaattcttgttgttgtgttactacttgat 18967871  T
326 gggatga 332  Q
    | |||||    
18967870 gtgatga 18967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 13782414 - 13782470
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||    
13782414 aacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatcag 13782470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 13789736 - 13789792
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||    
13789736 aacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatcag 13789792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 13803991 - 13804047
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||    
13803991 aacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatcag 13804047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 15576197 - 15576253
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||    
15576197 aaactgactactttattacttgttacgatttgatgcacttgccaatttcgtccatca 15576253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 13194289 - 13194341
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||| |||||||    
13194289 ttactactttattacttgttacgatttggtgcacttgccaatttcgtccatca 13194341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 17858993 - 17858937
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||  ||||||||||| ||||||||||| |||||||||| |||||||    
17858993 aaacttactacttaattacttgttactatttgatgcacatgtcaatttcgtccatca 17858937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 6091976 - 6091919
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    |||||| ||||||| ||| || ||||||||| ||||||||||||||||| ||||||||    
6091976 aaactttctactttattattttttacgatttaatgcacttgtcaatttcgtccatcag 6091919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 22727250 - 22727303
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||  ||||||||    
22727250 ttactactttattacttgttacaatttggtgcacttgtcaattttgtccatcag 22727303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 9395476 - 9395432
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaa 74  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||    
9395476 aaacttactacttcattacttgttacgatttgttgcacttgtcaa 9395432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 8037052 - 8037097
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaat 75  Q
    |||||||||||||| ||||||||||||||||  |||||||| ||||    
8037052 aaacttactactttattacttgttacgatttagtgcacttgccaat 8037097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 130 - 388
Target Start/End: Original strand, 27350 - 27618
Alignment:
130 aagagtagataacttttattaagtgggaga-aattacaaaac--ctctctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatacta 226  Q
    ||||||||| |||||| | ||||||| ||| |||||||| ||  ||||||||||| ||| | |||||| ||||| |||||||||||||||   |||||||    
27350 aagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattaccatctctcttgaaataggtgaatacta 27449  T
227 acaccagatgaaaccttacaggagaaactctatttccttcctgtattttt-cgctcactctccataaactctaattcttattgttgtattactattttat 325  Q
    |||| ||  ||||||| |||||||||||| ||||||||  || ||||||| | ||||||||| | || ||||||||||| ||||||| ||||||||| ||    
27450 acactaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcactctcaacaagctctaattcttgttgttgtgttactatttgat 27549  T
326 gggatga-ttgaaatg---gtgcaaataaacttg--atttataggagaggtaaacaatagttccttaca 388  Q
    | |||||  ||| |||   |||||||| ||||||  ||||||||||||||||| |  ||||||||||||    
27550 gtgatgagatgagatgattgtgcaaatgaacttgctatttataggagaggtaagccttagttccttaca 27618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 10427470 - 10427267
Alignment:
133 agtagataacttttattaagtgggaga-aattacaaaac--ctctctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatactaaca 229  Q
    ||||||||||||| | ||||||| ||| |||||||| ||  ||||||||||| ||| | |||||| ||||| |||||||||||||||   ||||||||||    
10427470 agtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaaca 10427371  T
230 ccagatgaaaccttacaggagaaactctatttccttcctgtattttt-cgctcactctccataaactctaattcttattgttgtattactattttatggg 328  Q
    | ||  ||||||| |||||||||||| ||||||||  || ||||||| | ||||||||| | || ||||||||||| ||||||| |||||| || ||| |    
10427370 ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcactctcaacaagctctaattcttgttgttgtgttactacttgatgtg 10427271  T
329 atga 332  Q
    ||||    
10427270 atga 10427267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 30797708 - 30797754
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
30797708 aaacttactactttattacttgttacgatttgatgcacttgccaatt 30797754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 10450354 - 10450301
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatcca 83  Q
    |||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||    
10450354 aaacttactactttattatttgttacgatttggtgcacttgccaatttcatcca 10450301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 13553513 - 13553465
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||    
13553513 aaacttactactttattacttattacgatttgatacacttgtcaatttc 13553465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 20717947 - 20717995
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||||    
20717947 aaacttactactttattacttgttacgatttggtgcacttgccaatttc 20717995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 22219953 - 22220009
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| |||||||||| |||||  |||||||||||||||| |||||||    
22219953 aaacttactactttattacttgttatgatttagtgcacttgtcaatttcgtccatca 22220009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 25367735 - 25367780
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||    
25367735 aacttactactttattacttgtttcgatttggtgcacttgtcaatt 25367780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 47023608 - 47023560
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||||    
47023608 aaacttactaccttattacttgttacgatttgatgtacttgccaatttc 47023560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 7023079 - 7023034
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaat 75  Q
    |||||||||||||| ||| ||||||||||||| ||||||| |||||    
7023079 aaacttactactttattatttgttacgatttggtgcacttatcaat 7023034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 12805824 - 12805767
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    |||||||||||||| ||||||||||||||||| |||| ||  ||||||| | ||||||    
12805824 aaacttactactttattacttgttacgatttggtgcatttaccaatttcgttcatcag 12805767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 33520225 - 33520286
Alignment:
31 aacttactactttgttacttgt-tacgatttgatgcacttgtcaatttcatccatcagaaac 91  Q
    |||||||||||||  ||||||| ||||||||||| |||||  ||||| ||||||||||||||    
33520225 aacttactactttactacttgtctacgatttgatccacttaccaattccatccatcagaaac 33520286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 130 - 332
Target Start/End: Original strand, 16183755 - 16183961
Alignment:
130 aagagtagataacttttattaagtgggaga-aattacaaaacctct--ctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatacta 226  Q
    ||||||||| |||||| | ||||||| ||| |||||||| ||||||  ||||||| ||| | |||||| ||||| |||||||||||||||   |||||||    
16183755 aagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatacta 16183854  T
227 acaccagatgaaaccttacaggagaaactctatttccttcctgtattttt-cgctcactctccataaactctaattcttattgttgtattactattttat 325  Q
    |||| ||  ||||||| |||||||||||| ||||||||  || ||||||| | ||||||||| | || ||||||||||| ||||||| |||||| || ||    
16183855 acactaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcactctcaacaagctctaattcttgttgttgtgttactacttgat 16183954  T
326 gggatga 332  Q
    | |||||    
16183955 gtgatga 16183961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 7143582 - 7143638
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
7143582 aaacttgctactttattacttgttacgatttggtgcacttgtcaatttcatccatca 7143638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 2352188 - 2352143
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
2352188 aacttactactttattacttgttacgatttgatgcacttgtcaatt 2352143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 21544736 - 21544680
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||    
21544736 aaacttactactttattacttgttacgatttggtgcacttgccaatttcgtccatca 21544680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 7152127 - 7152173
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||    
7152127 aaacttactactttattacttgttacgatttggtgcacttgtcaatt 7152173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 7494499 - 7494556
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    |||||||||| ||| ||||||||||||||||| |||||||| ||||||| ||||||||    
7494499 aaacttactaatttattacttgttacgatttggtgcacttgccaatttcgtccatcag 7494556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 9687136 - 9687088
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||    
9687136 aaacttactactttattacttattacgatttgatacacttgtcaatttc 9687088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 18497205 - 18497248
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtca 73  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
18497205 aaacttactacattgttacttgttacgatttggtgcacttgtca 18497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 4091404 - 4091354
Alignment:
28 aaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    |||||||||||||||| ||||||||||||||||| | |||||| |||||||    
4091404 aaaaacttactactttattacttgttacgatttggtacacttgccaatttc 4091354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 9071398 - 9071436
Alignment:
28 aaaaacttactactttgttacttgttacgatttgatgca 66  Q
    |||||||||||||||| ||||||||||||||||||||||    
9071398 aaaaacttactacttttttacttgttacgatttgatgca 9071436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 7325871 - 7325834
Alignment:
39 actttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    ||||| ||||||||||||||||||||||||||||||||    
7325871 actttattacttgttacgatttgatgcacttgtcaatt 7325834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 14074479 - 14074548
Alignment:
18 tgtgaagaccaaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||||| | |||||||||||||| ||||||||||||||||  |||||||  || |||| ||||||||    
14074479 tgtgaagacgataaacttactactttattacttgttacgattttgtgcactttccagtttcgtccatcag 14074548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 14384507 - 14384576
Alignment:
18 tgtgaagaccaaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||||| | |||||||||||||| ||||||||||||||||  |||||||  || |||| ||||||||    
14384507 tgtgaagacgataaacttactactttattacttgttacgattttgtgcactttccagtttcgtccatcag 14384576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 3401086 - 3401130
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||    
3401086 ttactactttattacttgttacgattttgtgcacttgtcaatttc 3401130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 7776407 - 7776367
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttg 70  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
7776407 aaacttactactttgttacttgttaagatttggtgcacttg 7776367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 18494611 - 18494563
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    ||||||||||| || ||||||||||||||||| |||||||| |||||||    
18494611 aaacttactaccttattacttgttacgatttggtgcacttgccaatttc 18494563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 3094189 - 3094236
Alignment:
37 ctactttgttacttgttacgatttgatgcacttgtcaatttcatccat 84  Q
    ||||||| ||||||||||||||||| ||| |||||||||||| |||||    
3094189 ctactttattacttgttacgatttggtgctcttgtcaatttcctccat 3094236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 5102715 - 5102749
Alignment:
130 aagagtagataacttttattaagtgggagaaatta 164  Q
    |||||||||||||||||| ||||||||||||||||    
5102715 aagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 415
Target Start/End: Original strand, 5102860 - 5103002
Alignment:
279 ctcactctccataaactctaattcttattgttgtattactattttatgggatgattgaaatggtgcaaataaact--tgatttataggagaggtaaacaa 376  Q
    ||||||||| | | ||||||||| || ||||||| |||||| || ||| ||| ||||||||||||||||| || |  | ||||||||||  ||||||| |    
5102860 ctcactctctagagactctaattattgttgttgtgttactacttgatgagataattgaaatggtgcaaatgaaatgattatttataggatgggtaaacca 5102959  T
377 tagttcct----tacagcaagacacttgtctttcatgcaaaac 415  Q
    | ||| ||    | || |||| |||||||||||||||||||||    
5102960 ttgtttcttgcatgcaacaagccacttgtctttcatgcaaaac 5103002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 10925081 - 10925122
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtc 72  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||    
10925081 aacttactactttattacttgatacgatttggtgcacttgtc 10925122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 11466952 - 11466915
Alignment:
35 tactactttgttacttgttacgatttgatgcacttgtc 72  Q
    ||||||||| |||||| |||||||||||||||||||||    
11466952 tactactttattacttcttacgatttgatgcacttgtc 11466915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 130 - 332
Target Start/End: Complemental strand, 46191424 - 46191218
Alignment:
130 aagagtagataacttttattaagtgggaga-aattacaaaac--ctctctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatacta 226  Q
    ||||||||| |||||| | ||||||| ||| |||||||| ||  ||||||||||| ||| | |||||| ||||| |||||||||||||||   |||||||    
46191424 aagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattaccctctctcttgaaataggagaatacta 46191325  T
227 acaccagatgaaaccttacaggagaaactctatttccttcctgtattttt-cgctcactctccataaactctaattcttattgttgtattactattttat 325  Q
    |||| ||  ||||||| |||||||||||| ||||||||  || ||||||| | ||||||||| | || ||||||||||| ||||||| |||||| || ||    
46191324 acactaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcactctcaacaagctctaattcttgttgttgtgttactacttgat 46191225  T
326 gggatga 332  Q
     ||||||    
46191224 tggatga 46191218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 27682937 - 27682993
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||| |||||||    
27682937 aaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 27682993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 34522128 - 34522184
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||| ||| ||||||||||||||||| |||||||| ||||||| |||||||    
34522128 aaacttactattttattacttgttacgatttggtgcacttgccaatttcttccatca 34522184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 50048254 - 50048310
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| ||||||||||  |||||||||||||| ||||||| |||||||    
50048254 aaacttactactttattacttgttataatttgatgcacttgccaatttcgtccatca 50048310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 17836845 - 17836791
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccat 84  Q
    |||||||||||||| |||||||||| |||||| |||||||| ||||||| |||||    
17836845 aaacttactactttcttacttgttatgatttggtgcacttgccaatttcgtccat 17836791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 4130278 - 4130175
Alignment:
130 aagagtagataacttttattaagtgggaga-aattacaaaac--ctctctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatacta 226  Q
    ||||||||| |||||| | ||||||| ||| |||||||| ||  ||||||||||| ||| | |||||| ||||| |||||||||||||||   |||||||    
4130278 aagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggacaatacta 4130179  T
227 acac 230  Q
    ||||    
4130178 acac 4130175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 23224632 - 23224680
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    ||||||||||| || |||||||||||||||||| ||||||| |||||||    
23224632 aaacttactaccttattacttgttacgatttgacgcacttgccaatttc 23224680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 11768939 - 11768885
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccat 84  Q
    |||||||||||||| || ||| |||||||||||||||||||  ||||| ||||||    
11768939 aaacttactactttattccttattacgatttgatgcacttgcaaattttatccat 11768885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 30676679 - 30676729
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaatttcatccat 84  Q
    |||||||||| ||||||||||||||||| || ||||||||| ||| |||||    
30676679 ttactactttattacttgttacgatttggtgaacttgtcaagttcgtccat 30676729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 23420530 - 23420485
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    ||||||||||||| ||||||||||||||||| | |||||| |||||    
23420530 aacttactactttattacttgttacgatttggtacacttgccaatt 23420485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 171 - 332
Target Start/End: Original strand, 24671187 - 24671349
Alignment:
171 ctctctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatactaacaccagatgaaaccttacaggagaaactctatttccttcctgt 270  Q
    ||||||||||| ||| | |||||| ||||| |||||||||||||||   ||||||||||| ||  ||||||| |||||||||||| ||||||||  || |    
24671187 ctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaacctcacaggagaaactatatttcctctctat 24671286  T
271 attttt-cgctcactctccataaactctaattcttattgttgtattactattttatgggatga 332  Q
    |||||| | ||||||||| | || |||||| |||| ||||||| |||||| || ||| |||||    
24671287 atttttcctctcactctcaacaagctctaactcttgttgttgtgttactaattgatgtgatga 24671349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 332
Target Start/End: Complemental strand, 4579240 - 4579078
Alignment:
171 ctctctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatactaacaccagatgaaaccttacaggagaaactctatttccttcctgt 270  Q
    ||||||||||| ||| | |||||| ||||| |||||| ||||||||   ||||||||| | |   ||||||| |||||||||||| ||||||||  || |    
4579240 ctctctaaatacaaggagagacaaattaccctctctcgtgaaataggagaatactaactctatgagaaacctcacaggagaaactatatttcctctctat 4579141  T
271 atttttcg-ctcactctccataaactctaattcttattgttgtattactattttatgggatga 332  Q
    |||||||  ||||||||| | || ||||||||||| ||||||| |||||| || ||| |||||    
4579140 atttttcctctcactctcaacaagctctaattcttgttgttgtgttactacttgatgtgatga 4579078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 412
Target Start/End: Original strand, 31204893 - 31205179
Alignment:
133 agtagataacttttattaagtgggagaaattacaaaacctctctaaataaaagcatagacaagttaccttctctctt-gaaata-gagaaatactaacac 230  Q
    |||||| |||||| | ||||||||| ||||||||||||||||||||||| ||| | ||||||||| |  ||||| || |||||| ||| |||||||||||    
31204893 agtagagaactttcactaagtgggaaaaattacaaaacctctctaaatataaggagagacaagtttc--tctctattcgaaatatgag-aatactaacac 31204989  T
231 cagatgaaaccttacaggagaaactctatttccttcctgtatttt--tcgctcactctccataaactctaattcttattgttgtattactattttatggg 328  Q
    |  | ||||||||| |||||||||| |||  | |  || ||||||  || |||| |||  | || ||||||||||| ||||||| ||| ||  | |||||    
31204990 cgaaagaaaccttataggagaaactatatgccatctctatatttttctctctcattctttagaagctctaattcttgttgttgtgttaatacataatggg 31205089  T
329 atgattgaaatggtgcaaataaacttg--atttataggagaggtaaacaatagttcctta----cagcaagacacttgtctttcatgcaa 412  Q
    |||||||||| | ||||||  | ||||  |||||||||| ||||||   |||||||||||    || |||| |||||||||| |||||||    
31205090 atgattgaaaggatgcaaacgagcttgctatttataggaaaggtaagtcatagttccttatatgcaacaagccacttgtcttccatgcaa 31205179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 414
Target Start/End: Original strand, 34489587 - 34489693
Alignment:
314 ttactattttatgggatgattgaaatggtgcaaataaacttg--atttataggagaggtaaacaatagttcctta----cagcaagacacttgtctttca 407  Q
    |||||| || ||||||||| |||||||||| |||| ||||||  ||||||| |||||||||||||| ||||||||    || |||| |||||||||| ||    
34489587 ttactacttgatgggatgaatgaaatggtggaaatgaacttgctatttataagagaggtaaacaatggttccttacatgcaacaagccacttgtcttcca 34489686  T
408 tgcaaaa 414  Q
    |||||||    
34489687 tgcaaaa 34489693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 25918152 - 25918085
Alignment:
20 tgaagaccaaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||| | ||||||||||| || ||||||||||| ||||| |||||||||||||||  ||||||||    
25918152 tgaagacgataaacttactacgttattacttgttacaatttggtgcacttgtcaattttttccatcag 25918085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 34469904 - 34470012
Alignment:
273 ttttcgctcactctccataaactctaattcttattgttgtattactattttatgggatgattgaaatggtgcaaataaacttg--atttataggagaggt 370  Q
    ||||| || |||||| | || |||||||| || ||||||| |||||| || || |||||| |||||| |||||||| |||||   |||||||||||||||    
34469904 ttttctcttactctcaacaagctctaattgttgttgttgtgttactacttgatcggatgaatgaaattgtgcaaatgaactttctatttataggagaggt 34470003  T
371 aaacaatag 379  Q
    |||| ||||    
34470004 aaaccatag 34470012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 415
Target Start/End: Original strand, 27630395 - 27630543
Alignment:
273 ttttcgctcactctccataaactctaattcttattgttgtattactattttatgggatgattgaaatggtgcaaataaacttg--atttataggagaggt 370  Q
    ||||| ||||||||| | || |||||| | || ||||||  || ||| || ||||||||| |||| ||||| |||| ||||||  ||||||| |||||||    
27630395 ttttctctcactctcaacaagctctaaatgtttttgttgcgttgctacttgatgggatgaatgaagtggtggaaatgaacttgctatttataagagaggt 27630494  T
371 aaacaatagttcctta----cagcaagacacttgtctttcatgcaaaac 415  Q
    |||| |||||| ||||    || |||| |||||||||| ||||||||||    
27630495 aaactatagtttcttacatgcaacaagccacttgtcttccatgcaaaac 27630543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 8839674 - 8839717
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaa 74  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||    
8839674 aacttactactttattacttattacgttttgatgcacttgtcaa 8839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 26419997 - 26420042
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    ||||||||| ||| ||||||||||||||||||| |||||| |||||    
26419997 aacttactattttattacttgttacgatttgattcacttgccaatt 26420042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 33913449 - 33913400
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaatttcatcca 83  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||||| ||||    
33913449 ttactactttattacttgttacaatttggtgcacttgccaatttcgtcca 33913400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 7365 - 7423
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcaga 88  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
7365 aaacttactactttattacttgttacgatttggtgcacttgtcaatttcgtccatcaga 7423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 22566 - 22626
Alignment:
20 tgaagaccaaaaacttactactttgttacttgttacgatttgatgcacttgtcaatttcat 80  Q
    ||||||| | ||| |||||||||| ||||||||||| || ||||||||||| |||||||||    
22566 tgaagacaataaatttactactttattacttgttacaatatgatgcacttgccaatttcat 22626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 13803149 - 13803097
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
13803149 ttactattttattacttgttacgatttgatgcacttgtcaatttcgtccatca 13803097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 12957567 - 12957620
Alignment:
33 cttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||| |||||||    
12957567 cttactactttattacttgttacgatttagtgcacttgtcaatttcgtccatca 12957620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 26853617 - 26853673
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||||||||| ||||||||||||||||| |||| ||  ||||||||||||||||    
26853617 aacttactactttattacttgttacgatttggtgcattttccaatttcatccatcag 26853673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 32240454 - 32240510
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| ||||||||||| ||||| |||||||| ||||||  |||||||    
32240454 aaacttactactttattacttgttacaatttggtgcacttgccaattttgtccatca 32240510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 28075666 - 28075721
Alignment:
22 aagaccaaaaacttactactttgttacttgttacgatttgatgcacttgtcaattt 77  Q
    |||| ||| ||||||||||||| ||||||||||| ||||| || ||||||||||||    
28075666 aagaacaataacttactactttattacttgttacaatttggtgtacttgtcaattt 28075721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 18790068 - 18790109
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtc 72  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||    
18790068 aacttactactttattacttgatacgatttggtgcacttgtc 18790109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 11273740 - 11273684
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||  |||||||    
11273740 aaacttactactttattacttgttacaatttgatgcacttgccaattttgtccatca 11273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 16617503 - 16617447
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||| |||| |||||||    
16617503 aaacttactactttattactagttacgatttggtgcacttgtcagtttcgtccatca 16617447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 24518959 - 24519014
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    ||||||||||||| ||||||||||||||||||| |||||| || |||| |||||||    
24518959 aacttactactttattacttgttacgatttgatacacttgccagtttcgtccatca 24519014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 20715843 - 20715899
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    ||||||||||| || |||||| |||| ||||| |||||||||||||||| |||||||    
20715843 aaacttactaccttattacttattacaatttggtgcacttgtcaatttcgtccatca 20715899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 16621523 - 16621469
Alignment:
32 acttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||| ||| ||||| ||||||||||| ||||||||||| |||| |||||||    
16621523 acttactattttattactagttacgatttggtgcacttgtcagtttcgtccatca 16621469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 31000612 - 31000668
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||||||||||| ||||||||||| ||||||||||||||  |||||| |||||||    
31000612 aaacttactactttattacttgttacaatttgatgcacttgcaaatttcgtccatca 31000668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 41256265 - 41256207
Alignment:
30 aaacttact-actttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||||||||||| ||||||||    
41256265 aaacttacttactttattatttgttacgatttggtgcacttgtcaatttcgtccatcag 41256207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 17496040 - 17495995
Alignment:
31 aacttactactttgttacttgttacgatttgatgcacttgtcaatt 76  Q
    ||||||||||| | ||||||||| ||||||| ||||||||||||||    
17496040 aacttactactatattacttgttccgatttggtgcacttgtcaatt 17495995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 23854096 - 23854055
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaat 75  Q
    |||||||||| |||||||||| |||||| |||||||||||||    
23854096 ttactactttattacttgttatgatttggtgcacttgtcaat 23854055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 27416124 - 27416083
Alignment:
45 ttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    ||||||||||||||||| |||| ||||||||||| |||||||    
27416124 ttacttgttacgatttggtgcaattgtcaatttcgtccatca 27416083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 30397034 - 30397170
Alignment:
131 agagtagataactttt-attaagtgggagaaattacaaaacctct--ctaaataaaagcatagacaagttaccttctctcttgaaatagagaaatactaa 227  Q
    |||||||| ||||||| | ||||||| ||||||||||| ||||||  ||| ||| ||| | |||||| ||||| ||| | |||||||||   |||| |||    
30397034 agagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattaccctctatgttgaaataggagaatattaa 30397133  T
228 caccagatgaaaccttacaggagaaactctatttcct 264  Q
    ||| ||  |||| || |||||||||||| ||||||||    
30397134 cactaggagaaatctcacaggagaaactatatttcct 30397170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 9971 - 10026
Alignment:
34 ttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcagaa 89  Q
    |||||||||| ||||||||||||||||| |||| ||| ||||||||||||| ||||    
9971 ttactactttattacttgttacgatttggtgcatttgccaatttcatccattagaa 10026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 7587 - 7539
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttc 78  Q
    |||||||||||||| |||||||||| |||||| |||||||||| |||||    
7587 aaacttactactttattacttgttatgatttggtgcacttgtcgatttc 7539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 10604 - 10553
Alignment:
35 tactactttgttacttgttacgatttgatgcacttgtcaatttcatccatca 86  Q
    |||||| || |||||||||| |||||| |||||||||||||||| |||||||    
10604 tactacattattacttgttatgatttggtgcacttgtcaatttcgtccatca 10553  T

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Target: scaffold0108 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 9909 - 9964
Alignment:
32 acttactactttgttacttgttacgatttgatgcacttgtcaatttcatccatcag 87  Q
    |||||||||||| ||||||||||| ||||||||||||||  ||||  |||||||||    
9909 acttactactttattacttgttacaatttgatgcacttgcgaattctatccatcag 9964  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 36548 - 36494
Alignment:
30 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttcatccat 84  Q
    |||||||||||||| |||||||||  |||||| |||||||| ||||||| |||||    
36548 aaacttactactttattacttgttgtgatttggtgcacttgccaatttcgtccat 36494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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