View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14379_high_6 (Length: 423)
Name: NF14379_high_6
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14379_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 39267072 - 39267460
Alignment:
| Q |
16 |
aatattataaaatctcctggattagaaattagcagcaatgagcaatgctataccgtctagaattgaaaataaagnnnnnnnnnngcctaataagttaaat |
115 |
Q |
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| T |
39267072 |
aatattataaaatctcctggattagaaattagcagcaatgagcaatgctataccgtctagaattgaaaaaaaagaaaaaaaa--gcctaataagttaaat |
39267169 |
T |
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| Q |
116 |
tgtaaggagtagtggttggcattacctgaagtacaccaaaccagcgtaacttggtcaaatcaagtccataagttaaattaccgcggccatggaaataccc |
215 |
Q |
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| T |
39267170 |
tgtaaggagtaccggttggcattacctgaagtacaccaaaccagcgtaacttggtcaaatcaagtccataagttaaattaccgcggccatggaaataccc |
39267269 |
T |
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| Q |
216 |
acctatgaataagtttgagaaagaaaaattaaagcaatagcacacacatacagatagtacatgatgagatcataccttgtagcaagaggcccaaaagaaa |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267270 |
acctatgaataagtttgagaaagaaacattaaagcaatagcacacacatacagatagtacatgatgagatcataccttgtagcaagaggcccaaaagaaa |
39267369 |
T |
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| Q |
316 |
aagcttaatcgtcctcaaaatgatcttttttgtggcattttgtttgctagagactttctgaaaggctatcgaagaattagaatattgttga |
406 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267370 |
aagcttaatcgtcctcgaaattatcttttttgtggcattttgtttgctagagactttctgaaaggctatcgaagaattagaatattgttga |
39267460 |
T |
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