View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14379_high_9 (Length: 379)
Name: NF14379_high_9
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14379_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 34537757 - 34537526
Alignment:
| Q |
12 |
tagcataggaaagagtggagaaggttgttacttgttgaccaaagtagttgtagctttgtagggtagcaatggttgacgtgtcctacgacttttaagatta |
111 |
Q |
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| T |
34537757 |
tagcataggaaagagtggagaaggttgttacttgttgaccaaagtagttgtagctttgtagggtagcaatggttgacgtgtcctacgacttttaagatta |
34537658 |
T |
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| Q |
112 |
ttgtcaaaggtgtctgtgatacatgaacagatcttttgtctcttcgtttatgtattttgacaattatgaccttttctctttcactgatctcatgcttgct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34537657 |
ttgtcaaaggtgtctgtgatacatgaacagatcttttgtctcttcgtttatgtattttgacaattatgaccttctctctttcactgatctcatgcttgct |
34537558 |
T |
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| Q |
212 |
tcaccacttcgtcatcaagtaaacccatataa |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34537557 |
tcaccacttcgtcatcaagtaaacccatataa |
34537526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 34537505 - 34537384
Alignment:
| Q |
240 |
ataaaaaagtgacatacacaagttttctcacagtatgcacaatttatttgttttttgaaatatatttttaacacaacatttgagttgcgtcattaatcaa |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34537505 |
ataaaaaagtgacatacacaagttttctcacagtatgcacattttatttgttttttgaaatatattttcaacacaacatttgagttgcgtcattaatcaa |
34537406 |
T |
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| Q |
340 |
ttatatttttgaacataaattt |
361 |
Q |
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|||||||||||||||||||||| |
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| T |
34537405 |
ttatatttttgaacataaattt |
34537384 |
T |
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