View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14379_low_1 (Length: 760)

Name: NF14379_low_1
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14379_low_1
NF14379_low_1
[»] chr6 (19 HSPs)
chr6 (247-737)||(23246681-23247170)
chr6 (1-201)||(23247216-23247416)
chr6 (27-201)||(23257601-23257778)
chr6 (247-439)||(23251391-23251581)
chr6 (247-417)||(23257389-23257555)
chr6 (31-201)||(23251628-23251798)
chr6 (31-201)||(23266162-23266329)
chr6 (47-200)||(23289582-23289729)
chr6 (47-200)||(23283239-23283389)
chr6 (89-189)||(23391074-23391174)
chr6 (247-301)||(23266062-23266116)
chr6 (64-147)||(23593009-23593092)
chr6 (546-648)||(23251210-23251312)
chr6 (89-191)||(23582849-23582948)
chr6 (89-191)||(23586732-23586831)
chr6 (545-653)||(23257251-23257357)
chr6 (331-439)||(23265963-23266060)
chr6 (108-143)||(23633835-23633870)
chr6 (520-581)||(23265847-23265908)


Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 247 - 737
Target Start/End: Complemental strand, 23247170 - 23246681
Alignment:
Q  247 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 346  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23247170 ggattgtaggataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 23247071  T
Q  347 gctttttatgtgaattattaaatcactaatcgagcatatagtgcatctcatgacttttattatatatgaaaaaataatataattttggaattttccaaat 446  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23247070 gctttttatgtgaat-attaaatcactaatcgagcatatagtgcatctcatgacttttattatatatgaaaaaagaatataattttggaattttccaaat 23246972  T
Q  447 ataacctattcagttggaatttcagcttttcacatagaacatttatctactgctatccttgttttggttacagtaagttgtaggaggtaaaatagtgcat 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||    
T  23246971 ataacctattcagttggaatttcagcttttcacatagaacatttatctactgctatccttgttttggttatactaagttgtaggaggtaaaatagtgtat 23246872  T
Q  547 cttgtcttaattttctcttctcttttgtaggacttnnnnnnnnngtctgttaccactacctggactgtgactgcaactggggtgcattcgccgcatttca 646  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23246871 cttgtcttaattttctcttctcttttgtaggacttaaaaaaaaagtctgttaccactacctggactgtgactgcaactggggtgcattcgccgcatttca 23246772  T
Q  647 ccataatgcacaggatcgtgattgttgccgtgactgcgaaccccgcctttatattttctttgttttcttcctggcaaagaaaggtagaaaa 737  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23246771 ccataatgtacaggatcgtgattgttgccgtgactgcgaaccccgcttttatattttctttgttttcttcctggcaaagaaaggtagaaaa 23246681  T

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Target: chr6; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23247416 - 23247216
Alignment:
Q  1 actaacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccag 100  Q
    |||||||||||||| | | ||| ||||||||||||||||||||| ||||||| ||||||||||||||| || ||| || |||||||||||||||||||||    
T  23247416 actaacaatattgacactatcgtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccag 23247317  T
Q  101 agttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaagatgatgaggtatc 200  Q
    |||||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23247316 agttgtggaggaatatggcgttgatgtcacctacacatagctttgagtatcatgagtatgacgatattcatgtacaagattttcaagatgatgaggtatc 23247217  T
Q  201 a 201  Q
    |    
T  23247216 a 23247216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 23257778 - 23257601
Alignment:
Q  27 tgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatg 126  Q
    |||||| |||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  23257778 tgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatg 23257679  T
Q  127 tcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatgaggtatca 201  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||    
T  23257678 tcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatca 23257601  T

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Target: chr6; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 247 - 439
Target Start/End: Complemental strand, 23251581 - 23251391
Alignment:
Q  247 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 346  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||||||||||||||| || || ||||||||||| ||||||||    
T  23251581 ggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttatttttata 23251482  T
Q  347 gctttttatgtgaattattaaatcactaatcgagcatatagtgcatctcatgacttttattatatatgaaaaaataatataattttggaattt 439  Q
    || |||||||||||||||||||||||||||| ||| || ||||||||||||   ||||||||||||||||| || ||||||||||||||||||    
T  23251481 gc-ttttatgtgaattattaaatcactaatcaagcgtaaagtgcatctcatcctttttattatatatgaaagaa-aatataattttggaattt 23251391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 247 - 417
Target Start/End: Complemental strand, 23257555 - 23257389
Alignment:
Q  247 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttctttttata 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  23257555 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttctctttata 23257456  T
Q  347 gctttttatgtgaattattaaatcactaatcgagcatatagtgcatctcatgacttttattatatatgaaa 417  Q
    || ||||||||| |||||||||||||||||| ||| || ||||||||   |||||||||||||||||||||    
T  23257455 gc-ttttatgtggattattaaatcactaatcaagcttaaagtgcatc---tgacttttattatatatgaaa 23257389  T

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Target: chr6; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 23251798 - 23251628
Alignment:
Q  31 gtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtccc 130  Q
    ||||| ||| |||| ||||||| |||| |||| ||||| |||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23251798 gtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagag---gaagtgttgaatatgccagagttgtggaggaatatggcactaatgtccc 23251702  T
Q  131 ctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatgaggtatca 201  Q
    ||||||||||||||| ||||||||   ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  23251701 ctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatca 23251628  T

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Target: chr6; HSP #7
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 23266329 - 23266162
Alignment:
Q  31 gtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtccc 130  Q
    ||||||||||||||  |||||| |||||||||||||| ||||||      |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  23266329 gtcgccacaaaggagttgaatatgttttgtgtggaagaagaaga------ggaaatgttgaatatgccggagttttggaggaatatggcactaatgtccc 23266236  T
Q  131 ctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatgaggtatca 201  Q
    ||||||||||||||||||||||||   | ||||||||| ||||| | ||||| |||||||||||||||||||||    
T  23266235 ctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatca 23266162  T

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Target: chr6; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 23289729 - 23289582
Alignment:
Q  47 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 146  Q
    |||||| ||||||||||||||| ||| ||||  ||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  23289729 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagttttga 23289630  T
Q  147 gtatcatgagtatgaagatattcatgtacaagattttcaagatgatgaggtatc 200  Q
    |   ||||||||||||||| || ||||||||   ||||||||||| ||||||||    
T  23289629 g---catgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatc 23289582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 23283389 - 23283239
Alignment:
Q  47 tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga 146  Q
    |||||| ||||||||||||||| ||| ||||  ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||  | ||    
T  23283389 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatagtatgga 23283290  T
Q  147 gtatcatgagtatgaagatattcatgtacaagattttcaagatgatgaggtatc 200  Q
    |   |||||||||||| || || || ||||||| ||||||||||| ||||||||    
T  23283289 g---catgagtatgaaaattttgatttacaagactttcaagatgaagaggtatc 23283239  T

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Target: chr6; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
Q  89 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 188  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || |||| |||| |||||| |||||||||| ||||| ||||||||    
T  23391174 tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatgaatatgaaaatattcatgttcaagactttcaaga 23391075  T
Q  189 t 189  Q
    |    
T  23391074 t 23391074  T

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Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 23266116 - 23266062
Alignment:
Q  247 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266116 ggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaat 23266062  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 23593092 - 23593009
Alignment:
Q  64 gaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgag 147  Q
    |||| |||| ||||| ||||| ||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| |||||    
T  23593092 gaagaagaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag 23593009  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 648
Target Start/End: Complemental strand, 23251312 - 23251210
Alignment:
Q  546 tcttgtcttaattttctcttctcttttgtaggacttnnnnnnnnngtctgttaccactacctggactgtgactgcaactggggtgcattcgccgcatttc 645  Q
    |||||||||| | |||||||||||||||||||||||         ||||||||| || | |||| |||||||| ||| |||||||||||||| |||||||    
T  23251312 tcttgtcttattcttctcttctcttttgtaggactttaaaaaaaggtctgttacgacgatctgggctgtgacttcaattggggtgcattcgctgcatttc 23251213  T
Q  646 acc 648  Q
    |||    
T  23251212 acc 23251210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 23582948 - 23582849
Alignment:
Q  89 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 188  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| |||   |||| ||||||||    
T  23582948 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga 23582852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 23586831 - 23586732
Alignment:
Q  89 tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga 188  Q
    |||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| |||   |||| ||||||||    
T  23586831 tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga 23586735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 653
Target Start/End: Complemental strand, 23257357 - 23257251
Alignment:
Q  545 atcttgtcttaattttctcttctcttttgtaggacttnnnnnnnnngtctgttaccactacctggactgtgactgcaactggggtgcattcgccgcattt 644  Q
    ||||||||||| ||||||  |||||||||||||||||         ||||||||| || | |||| |||||||||||| |||||||||| |||| |||||    
T  23257357 atcttgtcttatttttct--tctcttttgtaggactttaaaaaaaagtctgttacgacgatctgggctgtgactgcaattggggtgcatacgccacattt 23257260  T
Q  645 caccataat 653  Q
    |||| ||||    
T  23257259 caccgtaat 23257251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 439
Target Start/End: Complemental strand, 23266060 - 23265963
Alignment:
Q  331 ggaatttctttttatagctttttatgtgaattattaaatcactaatcgagcatatagtgcatctcatgacttttattatatatgaaaaaataatataatt 430  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||| | |||| ||||          |||||||||||||||||| || ||||||| |    
T  23266060 ggaatttcttttcatagctttt-atgtgaatttttaaatcactaatcaatcataaagtg----------cttttattatatatgaaagaagaatataact 23265972  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 23633870 - 23633835
Alignment:
Q  108 gaggaatatggcactaatgtcccctacacatagctt 143  Q
    |||||||||||| |||||||||||||||||||||||    
T  23633870 gaggaatatggctctaatgtcccctacacatagctt 23633835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 581
Target Start/End: Complemental strand, 23265908 - 23265847
Alignment:
Q  520 taagttgtaggaggtaaaatagtgcatcttgtcttaattttctcttctcttttgtaggactt 581  Q
    ||||||| | ||||||| |||| |  |||||||||| | |||||||||||||||||||||||    
T  23265908 taagttgaaagaggtaatatagcgtctcttgtcttattcttctcttctcttttgtaggactt 23265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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