View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14379_low_3 (Length: 676)

Name: NF14379_low_3
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14379_low_3
NF14379_low_3
[»] chr1 (7 HSPs)
chr1 (14-273)||(43963761-43964020)
chr1 (363-659)||(43964057-43964357)
chr1 (388-659)||(8729952-8730222)
chr1 (588-659)||(36430108-36430179)
chr1 (598-643)||(1015871-1015916)
chr1 (391-431)||(36430367-36430407)
chr1 (389-425)||(44941974-44942010)
[»] chr3 (3 HSPs)
chr3 (590-659)||(25375083-25375150)
chr3 (598-643)||(26904352-26904397)
chr3 (598-643)||(36616643-36616688)
[»] chr2 (2 HSPs)
chr2 (602-659)||(16960442-16960499)
chr2 (389-431)||(11555541-11555583)
[»] chr8 (3 HSPs)
chr8 (389-425)||(45102806-45102842)
chr8 (598-643)||(45485061-45485106)
chr8 (392-425)||(3708902-3708935)
[»] chr7 (2 HSPs)
chr7 (603-655)||(32202510-32202562)
chr7 (389-425)||(34306934-34306970)
[»] chr5 (3 HSPs)
chr5 (389-425)||(21214113-21214149)
chr5 (388-417)||(10875718-10875747)
chr5 (388-417)||(10880790-10880819)
[»] chr6 (1 HSPs)
chr6 (598-643)||(18818114-18818159)
[»] chr4 (1 HSPs)
chr4 (598-643)||(2159787-2159832)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 43963761 - 43964020
Alignment:
Q  14 ataatactgacaaaggttttgaacttgcacaagaaaaaggacagagaccttggacagatgctgagttcttcaatgatacatgatttgtgtaatgtgaaga 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43963761 ataataccgacaaaggttttgaacttgcacaagaaaaaggacagagaccttggacagatgctgagttcttcaatgatacatgatttgtgtaatgtgaaga 43963860  T
Q  114 tatatacaaagatgacaagtaatagtgtataatgaaagtaaagttgtgaaaatgtatttctataacgaatggaaagatcgtttataggttgtatatgttt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43963861 tatatacaaagatgacaagtaatagtgtataatgaaagtaaagttgtgaaaatgtatttctataacgaatggaaagatcgtttataggttgtatatgttt 43963960  T
Q  214 gatagtagaattcccaaattaattagtctaaatagctaaattcacaagtaaccagtatca 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43963961 gatagtagaattcccaaattaattagtctaaatagctaaattcacaagtaaccagtatca 43964020  T

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Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 363 - 659
Target Start/End: Original strand, 43964057 - 43964357
Alignment:
Q  363 acaattccatgttatgtttcttcacaggcagggtgtggcaatagccacaccagcccaggcccagtttttaacnnnnnnngtatttgtccactacagccag 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  43964057 acaattccatgttatgtttcttcacaggcagggtgtggcaatagccacaccagcccaggcccagtttttaactttttttgtatttgtccactacagccag 43964156  T
Q  463 tcaagcccatcagtattacagtcagtttctttcctgatttaacctcacatcccaataattataccccc----ctacccctacaaattcaataaacaaata 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    | |||||||||||||||||| |||||||    
T  43964157 tcaagcccatcagtattacagtcagtttctttcctgatttaacctcacaccccaataattatacccccacccccacccctacaaattcaatatacaaata 43964256  T
Q  559 ctaattttaaccattttcaagatcacactcattcacctatcgctcatcaacttcaattggcacttgttgcttatgctaggactcatagagatgttagtgg 658  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  43964257 ctaattttaaccattttcaagatcacacccattcacctatcgctcatcaacttcaattgacacttgttgcttatgctaggattcacagagatgttagtgg 43964356  T
Q  659 t 659  Q
    |    
T  43964357 t 43964357  T

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Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 388 - 659
Target Start/End: Original strand, 8729952 - 8730222
Alignment:
Q  388 aggcagggtgtggcaatagccacaccagcccaggcccagtttttaacnnnnnnngtatttgtccactacagccagtcaagcccatcagtattacagtcag 487  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||    
T  8729952 aggcagtgtgtggcaataaccacaccagcccaggcccagtttttaacttttt--gtatttgtccactacagccagtcaagcccatcagtattacagacag 8730049  T
Q  488 tttctttcctgatttaacctcacatcccaataattatacccccctacccctacaaattcaataaacaaatactaattttaaccattttcaagatcacact 587  Q
    ||||||||||||||| |||||||| |||||||||||||||| |  |||||||||||||| | |||||||||||||||||||||||||||||||||||||     
T  8730050 tttctttcctgattttacctcacaccccaataattataccctca-acccctacaaattccacaaacaaatactaattttaaccattttcaagatcacacc 8730148  T
Q  588 cattcacctatcgctcatcaacttcaattggcacttgttgcttatgctaggactcata--gagatgttagtggt 659  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  8730149 cattcacctatcactcatcaacttcaattggcacttgttgcttatgctaggactcatatggagatgttagtggt 8730222  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 659
Target Start/End: Complemental strand, 36430179 - 36430108
Alignment:
Q  588 cattcacctatcgctcatcaacttcaattggcacttgttgcttatgctaggactcatagagatgttagtggt 659  Q
    |||||||| |||||||||||| |||||||||||||||| |||| ||||| |||||||| | ||||| |||||    
T  36430179 cattcacccatcgctcatcaatttcaattggcacttgtggcttgtgctaagactcatacaaatgttggtggt 36430108  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 643
Target Start/End: Original strand, 1015871 - 1015916
Alignment:
Q  598 tcgctcatcaacttcaattggcacttgttgcttatgctaggactca 643  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  1015871 tcgcacatcaacttcaattggcacttgttgcttgtgctaagactca 1015916  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 36430407 - 36430367
Alignment:
Q  391 cagggtgtggcaatagccacaccagcccaggcccagttttt 431  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  36430407 cagggtgttgcaatagccacaccagcccaggcccaattttt 36430367  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 44941974 - 44942010
Alignment:
Q  389 ggcagggtgtggcaatagccacaccagcccaggccca 425  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  44941974 ggcagggtgtggcaataaccacaccagctcaggccca 44942010  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 659
Target Start/End: Complemental strand, 25375150 - 25375083
Alignment:
Q  590 ttcacctatcgctcatcaacttcaattggcacttgttgcttatgctaggactcatagagatgttagtggt 659  Q
    |||||| || |||||||||||||||||| |||||||||||| ||||| |||||||  |||||||||||||    
T  25375150 ttcacccattgctcatcaacttcaattgtcacttgttgcttgtgctaagactcat--agatgttagtggt 25375083  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 643
Target Start/End: Complemental strand, 26904397 - 26904352
Alignment:
Q  598 tcgctcatcaacttcaattggcacttgttgcttatgctaggactca 643  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  26904397 tcgcacatcaacttcaattggcacttgttgcttgtgctaagactca 26904352  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 643
Target Start/End: Original strand, 36616643 - 36616688
Alignment:
Q  598 tcgctcatcaacttcaattggcacttgttgcttatgctaggactca 643  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  36616643 tcgcacatcaacttcaattggcacttgttgcttgtgctaagactca 36616688  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 659
Target Start/End: Complemental strand, 16960499 - 16960442
Alignment:
Q  602 tcatcaacttcaattggcacttgttgcttatgctaggactcatagagatgttagtggt 659  Q
    ||||||||||||||||| |||| |||||| |||||||||||||| ||||||| |||||    
T  16960499 tcatcaacttcaattggtacttattgcttgtgctaggactcatatagatgtttgtggt 16960442  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 11555541 - 11555583
Alignment:
Q  389 ggcagggtgtggcaatagccacaccagcccaggcccagttttt 431  Q
    |||||||||||||||||||||||||||| ||| |||| |||||    
T  11555541 ggcagggtgtggcaatagccacaccagctcagacccaattttt 11555583  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 45102842 - 45102806
Alignment:
Q  389 ggcagggtgtggcaatagccacaccagcccaggccca 425  Q
    |||||||||||||||||||||||||||||||||||||    
T  45102842 ggcagggtgtggcaatagccacaccagcccaggccca 45102806  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 643
Target Start/End: Original strand, 45485061 - 45485106
Alignment:
Q  598 tcgctcatcaacttcaattggcacttgttgcttatgctaggactca 643  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  45485061 tcgcacatcaacttcaattggcacttgttgcttgtgctaagactca 45485106  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 3708902 - 3708935
Alignment:
Q  392 agggtgtggcaatagccacaccagcccaggccca 425  Q
    ||||||||||||||||||||||||| ||||||||    
T  3708902 agggtgtggcaatagccacaccagctcaggccca 3708935  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 655
Target Start/End: Original strand, 32202510 - 32202562
Alignment:
Q  603 catcaacttcaattggcacttgttgcttatgctaggactcatagagatgttag 655  Q
    |||||||||||||||||||||||||||| ||||| |||||||||  |||||||    
T  32202510 catcaacttcaattggcacttgttgcttgtgctaagactcatagctatgttag 32202562  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 34306934 - 34306970
Alignment:
Q  389 ggcagggtgtggcaatagccacaccagcccaggccca 425  Q
    |||||||||||||||||||||||||||||||||||||    
T  34306934 ggcagggtgtggcaatagccacaccagcccaggccca 34306970  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 21214113 - 21214149
Alignment:
Q  389 ggcagggtgtggcaatagccacaccagcccaggccca 425  Q
    |||||||||||||||||||||||||||||||||||||    
T  21214113 ggcagggtgtggcaatagccacaccagcccaggccca 21214149  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 10875718 - 10875747
Alignment:
Q  388 aggcagggtgtggcaatagccacaccagcc 417  Q
    ||||||||||||||||||||||||||||||    
T  10875718 aggcagggtgtggcaatagccacaccagcc 10875747  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 10880790 - 10880819
Alignment:
Q  388 aggcagggtgtggcaatagccacaccagcc 417  Q
    ||||||||||||||||||||||||||||||    
T  10880790 aggcagggtgtggcaatagccacaccagcc 10880819  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 643
Target Start/End: Complemental strand, 18818159 - 18818114
Alignment:
Q  598 tcgctcatcaacttcaattggcacttgttgcttatgctaggactca 643  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  18818159 tcgcacatcaacttcaattggcacttgttgcttgtgctaagactca 18818114  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 643
Target Start/End: Complemental strand, 2159832 - 2159787
Alignment:
Q  598 tcgctcatcaacttcaattggcacttgttgcttatgctaggactca 643  Q
    |||| |||||||||||||| ||||||||||||| ||||| ||||||    
T  2159832 tcgcacatcaacttcaattagcacttgttgcttgtgctaagactca 2159787  T

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