View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14379_low_5 (Length: 538)
Name: NF14379_low_5
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14379_low_5 |
 | |
|
| [»] chr1 (18 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 104 - 538
Target Start/End: Complemental strand, 9171112 - 9170678
Alignment:
| Q |
104 |
tggtggttccattttgctacaacaactgtctacaagagaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagcccccaaaaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9171112 |
tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac |
9171013 |
T |
|
| Q |
204 |
tacgatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagttttacccgacaacaaaatcgtcgctgtnnnnnnntccaaaataa |
303 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9171012 |
tacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggagttttacctgacaacaaaatcgtcgctgtaaaaaaatccaaaataa |
9170913 |
T |
|
| Q |
304 |
ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170912 |
ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac |
9170813 |
T |
|
| Q |
404 |
agaagttccttcattggtgtatgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacc |
503 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170812 |
agaagttccttcattggtgtacgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaacaaataatccaacatggaaaacc |
9170713 |
T |
|
| Q |
504 |
cgcttaaggatagcagcagagacagctggagcttt |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170712 |
cgcttaaggatagcagcagagacagctggagcttt |
9170678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 104 - 538
Target Start/End: Complemental strand, 9200679 - 9200245
Alignment:
| Q |
104 |
tggtggttccattttgctacaacaactgtctacaagagaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagcccccaaaaac |
203 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9200679 |
tggtggttccattttggtacagcaactatctacaagagaagacacttctcaagcagcacaaatattcacagaagaggaacttaagaaagccaccaaaaaa |
9200580 |
T |
|
| Q |
204 |
tacgatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagttttacccgacaacaaaatcgtcgctgtnnnnnnntccaaaataa |
303 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||| |
|
|
| T |
9200579 |
tacgacgaaagcttaatcatcggtagaggaggttttggtacagtttacaaaggagttttacctgataacaaaattgtcgctgtaaaaaaatccaaaataa |
9200480 |
T |
|
| Q |
304 |
ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9200479 |
ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagac |
9200380 |
T |
|
| Q |
404 |
agaagttccttcattggtgtatgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacc |
503 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9200379 |
agaagttccttcattagtgtacgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaacaaataatccaacatggaaaaca |
9200280 |
T |
|
| Q |
504 |
cgcttaaggatagcagcagagacagctggagcttt |
538 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |
|
|
| T |
9200279 |
cgtttaaggatagcagcggagacagctggagcttt |
9200245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 104 - 538
Target Start/End: Complemental strand, 9219195 - 9218761
Alignment:
| Q |
104 |
tggtggttccattttgctacaacaactgtctacaagagaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagcccccaaaaac |
203 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
9219195 |
tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcaaatattcacggaagaggaacttaagaaagccaccaaaaac |
9219096 |
T |
|
| Q |
204 |
tacgatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagttttacccgacaacaaaatcgtcgctgtnnnnnnntccaaaataa |
303 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||||||||||| ||||||| |||| ||||| |||||||| |||||||| |||||||||| |
|
|
| T |
9219095 |
tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgtcaaaaagtccaaaataa |
9218996 |
T |
|
| Q |
304 |
ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac |
403 |
Q |
| |
|
| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| | ||||| |
|
|
| T |
9218995 |
tagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac |
9218896 |
T |
|
| Q |
404 |
agaagttccttcattggtgtatgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacc |
503 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||| |||| |||||| |||||||||| |
|
|
| T |
9218895 |
agaagttccttcgttggtgtatgaatttgttagcaacggaacactttttgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaaca |
9218796 |
T |
|
| Q |
504 |
cgcttaaggatagcagcagagacagctggagcttt |
538 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| |
|
|
| T |
9218795 |
cgtttaaggatagcagcagagacagctggtgcttt |
9218761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 104 - 538
Target Start/End: Complemental strand, 9156374 - 9155940
Alignment:
| Q |
104 |
tggtggttccattttgctacaacaactgtctacaagagaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagcccccaaaaac |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
9156374 |
tggtggttccattttgctacaacaactatctacaagagaagacacctcgcaatcagctgaaatattcactgaagaggaacttaagaaagccaccaaaaac |
9156275 |
T |
|
| Q |
204 |
tacgatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagttttacccgacaacaaaatcgtcgctgtnnnnnnntccaaaataa |
303 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
9156274 |
tacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgtaaaaaaatcaaaaataa |
9156175 |
T |
|
| Q |
304 |
ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac |
403 |
Q |
| |
|
| || ||||||||||| ||||| || ||||||||||||||||| || ||||||||||||| || ||||||||||||||| | || |||||| ||||||| |
|
|
| T |
9156174 |
tagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagac |
9156075 |
T |
|
| Q |
404 |
agaagttccttcattggtgtatgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacc |
503 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9156074 |
agaagttccttccttggtttatgaattcgttagcaatggtacactttttgatttcatacatagtactaaagataaaacaaacaatccaacatggaaaacc |
9155975 |
T |
|
| Q |
504 |
cgcttaaggatagcagcagagacagctggagcttt |
538 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||| |
|
|
| T |
9155974 |
cgtttaaagatagcagcagagacagccggagcttt |
9155940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 108 - 538
Target Start/End: Complemental strand, 9162282 - 9161852
Alignment:
| Q |
108 |
ggttccattttgctacaacaactgtctacaagagaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagcccccaaaaactacg |
207 |
Q |
| |
|
||||| || ||||||||||| || || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9162282 |
ggttctatattgctacaacagctatcaacaagagaagacacttcgcaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacg |
9162183 |
T |
|
| Q |
208 |
atgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagttttacccgacaacaaaatcgtcgctgtnnnnnnntccaaaataattga |
307 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||| ||||||||||| || |
|
|
| T |
9162182 |
atgatagcttaatcatcggcagaggaggttttggtacagttttcaaaggagtcttaccagataacaaaatcgtcgctgtcaaaaaatccaaaataataga |
9162083 |
T |
|
| Q |
308 |
cgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaa |
407 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| | || |||||| ||||||||||| |
|
|
| T |
9162082 |
tgcaaatcaaattgagcagttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaa |
9161983 |
T |
|
| Q |
408 |
gttccttcattggtgtatgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacccgct |
507 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||| || | |
|
|
| T |
9161982 |
gttccttcgttggtgtatgaattcgttagcaatggtacacttttcgatttcatacataatactaaagataaagcaaacaatccaacatggaaaacacgtt |
9161883 |
T |
|
| Q |
508 |
taaggatagcagcagagacagctggagcttt |
538 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |
|
|
| T |
9161882 |
taaagatagcagcagagacagccggagcttt |
9161852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 104 - 538
Target Start/End: Original strand, 9118166 - 9118600
Alignment:
| Q |
104 |
tggtggttccattttgctacaacaactgtctacaagagaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagcccccaaaaac |
203 |
Q |
| |
|
|||||||| ||||||||||||| |||| | ||||||||||||||| || ||| ||||||| |||||||||||| |||||||||| ||||| |||| | | |
|
|
| T |
9118166 |
tggtggtttcattttgctacaaaaactctttacaagagaagacacgtctcaatcagctcagatattcacagaaaaggaacttaaaaaagctaccaacagc |
9118265 |
T |
|
| Q |
204 |
tacgatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagttttacccgacaacaaaatcgtcgctgtnnnnnnntccaaaataa |
303 |
Q |
| |
|
||||| |||||||||||| | || ||||||||||| |||||| ||| |||||||||||||||||| |||| |||||| ||||| |||| ||||| |
|
|
| T |
9118266 |
tacgacgaaagcttaatcattggaagaggaggtttcggtacaattttcaaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataa |
9118365 |
T |
|
| Q |
304 |
ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac |
403 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
9118366 |
tagacgcaaatcaaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcataggaatgttgtcaaacttttagggtgttgtttagagac |
9118465 |
T |
|
| Q |
404 |
agaagttccttcattggtgtatgaatttgttagcaacggtacacttttcgatttcatacaaagtactaaagataaaacaaataatccaacatggaaaacc |
503 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||| |||| |
|
|
| T |
9118466 |
agaagttccttccttggtctatgaattcgttagccacggtacacttttcgatttcatacaaaatactaagaataaaataaataatccaagatgggaaaca |
9118565 |
T |
|
| Q |
504 |
cgcttaaggatagcagcagagacagctggagcttt |
538 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
9118566 |
cgtctaaggatagcagcagagacagctggagcttt |
9118600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 9179094 - 9178933
Alignment:
| Q |
104 |
tggtggttccattttgctacaacaactgtctacaagagaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagcccccaaaaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9179094 |
tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac |
9178995 |
T |
|
| Q |
204 |
tacgatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagttttacc |
265 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9178994 |
tacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggagttttacc |
9178933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 160 - 538
Target Start/End: Complemental strand, 9230024 - 9229646
Alignment:
| Q |
160 |
ctcaaatattcacagaagaggaacttaagaaagcccccaaaaactacgatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaaggagt |
259 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||| |||| ||||| || || || ||||| | |||||||||||||| ||||| |||||||||||| | |
|
|
| T |
9230024 |
ctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaat |
9229925 |
T |
|
| Q |
260 |
tttacccgacaacaaaatcgtcgctgtnnnnnnntccaaaataattgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaata |
359 |
Q |
| |
|
| || | ||||||| || || || | ||||||||||| || || | ||| | ||||||||||| |||||||| |||||| || |||||||| |
|
|
| T |
9229924 |
tctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttttgtcccaaata |
9229825 |
T |
|
| Q |
360 |
aatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgtatgaatttgttagcaacggtacacttttcgatttca |
459 |
Q |
| |
|
|||||||| ||||||||||||||| | || |||||| | |||||| ||||||||| | | || ||||||||| ||||||| ||||| ||||||||||| | |
|
|
| T |
9229824 |
aatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatttattagcaatggtacccttttcgatttga |
9229725 |
T |
|
| Q |
460 |
tacaaagtactaaagataaaacaaataatccaacatggaaaacccgcttaaggatagcagcagagacagctggagcttt |
538 |
Q |
| |
|
| || | || || || || ||||||| ||| ||||||||| || |||||||||||||| || | ||| |||||||| |
|
|
| T |
9229724 |
tgcacactagtattgaaaaggaaaataatgcaatatggaaaacgcgtttaaggatagcagcggaaatagcaggagcttt |
9229646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 435
Target Start/End: Original strand, 1868389 - 1868509
Alignment:
| Q |
315 |
caaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttcctt |
414 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
1868389 |
caaatcgatcaattcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctt |
1868488 |
T |
|
| Q |
415 |
cattggtgtatgaatttgtta |
435 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
1868489 |
tgttggtttatgaatttgtta |
1868509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 1842789 - 1842900
Alignment:
| Q |
324 |
caattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgt |
423 |
Q |
| |
|
|||||||||||||||||| || |||| | |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||| | |
|
|
| T |
1842789 |
caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggttt |
1842888 |
T |
|
| Q |
424 |
atgaatttgtta |
435 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1842889 |
atgaatttgtta |
1842900 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 315 - 450
Target Start/End: Original strand, 1856794 - 1856929
Alignment:
| Q |
315 |
caaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttcctt |
414 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| | | ||||||||||| || ||||| ||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
1856794 |
caaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctt |
1856893 |
T |
|
| Q |
415 |
cattggtgtatgaatttgttagcaacggtacacttt |
450 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
1856894 |
tgttggtttatgagtttgttagcaatggtactcttt |
1856929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 294 - 450
Target Start/End: Complemental strand, 1816271 - 1816115
Alignment:
| Q |
294 |
tccaaaataattgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgtt |
393 |
Q |
| |
|
||||||| ||| |||| || |||||||| ||||||||||| ||||| | |||| | | ||||||||||| |||||||| ||||||||| | ||||||| |
|
|
| T |
1816271 |
tccaaaacaatagacgaaagccaaattgaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgtt |
1816172 |
T |
|
| Q |
394 |
gtctagagacagaagttccttcattggtgtatgaatttgttagcaacggtacacttt |
450 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
1816171 |
gtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtactcttt |
1816115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 9171202 - 9171160
Alignment:
| Q |
15 |
cattattctatttgtggtgatttcttctctatacttgacatac |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9171202 |
cattattctatttgtggtgatttcttctctatacttgacatac |
9171160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 9179184 - 9179142
Alignment:
| Q |
15 |
cattattctatttgtggtgatttcttctctatacttgacatac |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9179184 |
cattattctatttgtggtgatttcttctctatacttgacatac |
9179142 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 9200769 - 9200727
Alignment:
| Q |
15 |
cattattctatttgtggtgatttcttctctatacttgacatac |
57 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
9200769 |
cattgttctatttgtcgcgatttcttctctatacttgacatac |
9200727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 1816358 - 1816309
Alignment:
| Q |
207 |
gatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaagg |
256 |
Q |
| |
|
||||| ||||||||| | || |||||||||||||||||||||| |||||| |
|
|
| T |
1816358 |
gatgagagcttaatcataggtagaggaggttttggtacagttttcaaagg |
1816309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 1856686 - 1856735
Alignment:
| Q |
207 |
gatgaaagcttaatcttcggcagaggaggttttggtacagtttacaaagg |
256 |
Q |
| |
|
||||| ||||||||| | || | ||||||||||||||||||||||||||| |
|
|
| T |
1856686 |
gatgagagcttaatcataggtaaaggaggttttggtacagtttacaaagg |
1856735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 9118078 - 9118118
Alignment:
| Q |
17 |
ttattctatttgtggtgatttcttctctatacttgacatac |
57 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
9118078 |
ttattctatttgtggggatttcatctctatacttgatatac |
9118118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 37572121 - 37572186
Alignment:
| Q |
385 |
tagggtgttgtctagagacagaagttccttcattggtgtatgaatttgttagcaacggtacacttt |
450 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
37572121 |
tagggtgttgtctagaaacagaagttcctcggttggtttatgagtttgttagcaatggtactcttt |
37572186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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