View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1437_high_1 (Length: 418)

Name: NF1437_high_1
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1437_high_1
NF1437_high_1
[»] chr7 (10 HSPs)
chr7 (7-238)||(8907745-8907978)
chr7 (303-402)||(8907581-8907680)
chr7 (61-194)||(11743038-11743170)
chr7 (59-130)||(31257036-31257107)
chr7 (81-166)||(28080694-28080778)
chr7 (59-115)||(48417535-48417591)
chr7 (19-115)||(21213061-21213159)
chr7 (59-138)||(23796181-23796260)
chr7 (59-144)||(2544438-2544523)
chr7 (76-225)||(48661466-48661614)
[»] chr2 (10 HSPs)
chr2 (59-225)||(15124694-15124859)
chr2 (76-130)||(8424913-8424967)
chr2 (76-130)||(25082542-25082596)
chr2 (76-137)||(15460999-15461060)
chr2 (59-152)||(17854912-17855005)
chr2 (59-152)||(36352142-36352235)
chr2 (76-151)||(5206723-5206798)
chr2 (59-166)||(33606259-33606365)
chr2 (81-233)||(16419297-16419448)
chr2 (59-115)||(40718227-40718283)
[»] chr5 (9 HSPs)
chr5 (59-152)||(20225049-20225142)
chr5 (76-144)||(1564558-1564626)
chr5 (81-233)||(24346639-24346791)
chr5 (76-144)||(25258292-25258360)
chr5 (76-144)||(25322082-25322150)
chr5 (81-144)||(6919420-6919482)
chr5 (76-130)||(33337460-33337514)
chr5 (59-152)||(38731821-38731914)
chr5 (76-140)||(15439012-15439076)
[»] chr8 (5 HSPs)
chr8 (76-225)||(3157470-3157618)
chr8 (81-130)||(8084392-8084441)
chr8 (59-127)||(16050037-16050105)
chr8 (59-129)||(34843125-34843195)
chr8 (59-152)||(10614922-10615015)
[»] chr6 (5 HSPs)
chr6 (59-144)||(6054177-6054262)
chr6 (59-150)||(27993627-27993719)
chr6 (81-150)||(10145735-10145804)
chr6 (59-144)||(6542934-6543019)
chr6 (59-144)||(9705028-9705113)
[»] chr4 (9 HSPs)
chr4 (96-139)||(5398177-5398220)
chr4 (84-225)||(35819039-35819179)
chr4 (81-144)||(21750268-21750331)
chr4 (76-131)||(30305299-30305354)
chr4 (59-130)||(36685880-36685951)
chr4 (76-130)||(18528222-18528276)
chr4 (83-136)||(43743251-43743304)
chr4 (76-144)||(18528448-18528516)
chr4 (58-114)||(35796998-35797054)
[»] chr3 (4 HSPs)
chr3 (59-225)||(13574831-13574997)
chr3 (76-140)||(20303059-20303123)
chr3 (81-225)||(37246764-37246907)
chr3 (59-144)||(54567900-54567985)
[»] chr1 (6 HSPs)
chr1 (97-144)||(16162979-16163026)
chr1 (85-152)||(38733185-38733252)
chr1 (76-131)||(46176751-46176806)
chr1 (76-130)||(25145490-25145544)
chr1 (76-221)||(27413372-27413516)
chr1 (96-152)||(9499290-9499346)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 8907978 - 8907745
Alignment:
Q  7 agattatactattgttaaaaaatctcgcatcaaacaaacggttgcatgaacatgt--ttataaatgagagaaatcatcacctcacaaatcagttttgtgc 104  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||  |||||||||||||||||||||| |||| |||| ||||||||      
T  8907978 agattatactattgttaaagaatctcgcatcaaacaaacgatggcatgaacatgtgtttataaatgagagaaatcatcatctcataaattagttttgtat 8907879  T
Q  105 ggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctgctaccagattttcactatctaggcatcca 204  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907878 agttgtgttagattcaatcacgattttcaagatgatatcatagtctctattaagatctattgaactacctgctaccagattttcactatctaggcatcca 8907779  T
Q  205 acatttatgtcgacgaaccaaactcaataatgat 238  Q
    ||||||||||||||||||||||||||||||||||    
T  8907778 acatttatgtcgacgaaccaaactcaataatgat 8907745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 303 - 402
Target Start/End: Complemental strand, 8907680 - 8907581
Alignment:
Q  303 gacaggctttaacaggagagggagttgttgggtaatagacggctgaatccgtccttgttgtcggccctacatgatcaaatggcatgaaaatggacattac 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907680 gacaggctttaacaggagagggagttgttgggtaatagacggctgaatccgtccttgttgtcggccctacatgatcaaatggcatgaaaatggacattac 8907581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 11743038 - 11743170
Alignment:
Q  61 tttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagat 160  Q
    |||||||||| ||| ||||||||| ||||||| | ||||||||   |||||||||| | |||||||||||| |||||||||||| || |||| | |||||    
T  11743038 tttataaatgggagcaatcatcacatcacaaaccggttttgtggaattgtgttagacttaaccacgatttttaagatgatatcagagcctct-tcaagat 11743136  T
Q  161 ctattgaactacctgctaccagattttcactatc 194  Q
    | ||| ||| || ||||  ||||||||| |||||    
T  11743137 ccattaaaccacttgctctcagattttcgctatc 11743170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 31257107 - 31257036
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    ||||||||| || | | |||| |||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  31257107 tgtttataagtgggggcaatcttcacctcacaaaccagttttgtggggttgtgttagactcaaccacgattt 31257036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 28080694 - 28080778
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattg 166  Q
    |||| |||||| || |||||||| |||| |||||||| ||||||||||||  |||||||||||| || |||| | |||||||||||    
T  28080694 tcacttcacaagtcggttttgtggggttatgttagatccaaccacgatttctaagatgatatcagagcctct-tcaagatctattg 28080778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 48417591 - 48417535
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 115  Q
    ||||||||| |||||| |||| | |||||||||| |||||||||| |||||||||||    
T  48417591 tgtttataagtgagagcaatcttgacctcacaaaccagttttgtggggttgtgttag 48417535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 21213159 - 21213061
Alignment:
Q  19 tgttaaaaaatctcgcatcaaacaaacggttgcatgaacatgt--ttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 115  Q
    ||||||| |||| ||||||| | ||| | ||||||||||||||  |||||| || ||| |||||||||||||||| |  ||||||||  ||||||||||    
T  21213159 tgttaaagaatcccgcatcagataaaagattgcatgaacatgtgtttataagtgggagtaatcatcacctcacaagttggttttgtggagttgtgttag 21213061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 23796260 - 23796181
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatg 138  Q
    ||||||||| || | | ||||||||||||||||||   ||||||| |||||||||||  ||||||| |||||| ||||||    
T  23796260 tgtttataagtgggggcaatcatcacctcacaaattgattttgtggggttgtgttaggctcaaccatgatttttaagatg 23796181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 2544523 - 2544438
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    ||||||||| || | | |||| ||||||||||| || |||||||| |||||||||||   ||||||||||||| || ||| |||||    
T  2544523 tgtttataagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaggcccaaccacgatttttaatatggtatca 2544438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 48661614 - 48661466
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctg 175  Q
    |||| |||||||||||  | |||||||| | ||||||||||  ||||||||||||  || ||||||||| || |||| |||||| | ||||| | |||||    
T  48661614 aatcctcacctcacaagccggttttgtgagattgtgttagacccaaccacgatttctaatatgatatcagagcctct-ttaagaaccattgagccacctg 48661516  T
Q  176 ctaccagattttcactatctaggcatccaacatttatgtcgacgaaccaa 225  Q
    ||| ||| ||| | || ||  | || ||| |||||||||| |||||||||    
T  48661515 ctatcaggtttccgctttcgggccacccaccatttatgtccacgaaccaa 48661466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 15124859 - 15124694
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaag 158  Q
    ||||||||| |||| | |||| |||| |||||| || |||||||| ||||||||||||  ||||||||||||  |||||| ||||| |||||||   |||    
T  15124859 tgtttataagtgagggcaatcttcacttcacaattcggttttgtggggttgtgttagacccaaccacgatttctaagatggtatcagagtctct-ccaag 15124761  T
Q  159 atctattgaactacctgctaccagattttcactatctaggcatccaacatttatgtcgacgaaccaa 225  Q
    ||| |||| || |||||||| ||| |||||  ||||  | |||||| |||||||||| |||||||||    
T  15124760 atccattggaccacctgctatcaggttttcgttatcgggtcatccaccatttatgtccacgaaccaa 15124694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 8424913 - 8424967
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    ||||||||||||||||| |||||||||| ||||||||||   |||||||||||||    
T  8424913 aatcatcacctcacaaaccagttttgtggggttgtgttaagctcaaccacgattt 8424967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 25082596 - 25082542
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    ||||||||||||||||  |||||||||| ||||||||||| | ||||||||||||    
T  25082596 aatcatcacctcacaagccagttttgtggggttgtgttaggtccaaccacgattt 25082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 15460999 - 15461060
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagat 137  Q
    ||||||||||||||||  |||||||||| |||||||||||| |||||||  ||||| |||||    
T  15460999 aatcatcacctcacaagacagttttgtggggttgtgttagactcaaccataatttttaagat 15461060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 17855005 - 17854912
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctct 152  Q
    ||||||||| |||| | |||| |||||||||||  | |||||||| ||||||| ||||  ||||||||||||  || ||||||||| |||||||    
T  17855005 tgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgctagacccaaccacgatttctaatatgatatcagagtctct 17854912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 36352235 - 36352142
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctct 152  Q
    ||||||||| || | | ||||||||||||| ||  | |||||||| ||||||||||| ||||||||| ||||| |||||| ||| | |||||||    
T  36352235 tgtttataagtgggggcaatcatcacctcaaaagccggttttgtggggttgtgttaggttcaaccacaatttttaagatggtattagagtctct 36352142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 5206723 - 5206798
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctc 151  Q
    |||| |||||| |||| ||||||||||| |||||||| ||| |||| ||||||||  |||||| ||||| ||||||    
T  5206723 aatcttcaccttacaagtcagttttgtgaggttgtgtaagactcaatcacgatttctaagatgttatcagagtctc 5206798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 33606365 - 33606259
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaag 158  Q
    ||||||||| || | | |||| |||||||||||  ||||||||||  ||| ||||||   ||||||||||||  |||||||||||| ||||||| | |||    
T  33606365 tgtttataagtgggggtaatcctcacctcacaagccagttttgtggcgttatgttaggcacaaccacgatttctaagatgatatcaaagtctct-tcaag 33606267  T
Q  159 atctattg 166  Q
    ||||||||    
T  33606266 atctattg 33606259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 16419297 - 16419448
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctgctacc 180  Q
    |||||||||||  | |||||||| |||||| ||||   ||||||||||||  |||||| ||||| || ||||   |||||| ||||  | |||||||| |    
T  16419297 tcacctcacaagccggttttgtggggttgtattaggcccaaccacgatttctaagatggtatcagagcctct-ccaagatccattgggccacctgctatc 16419395  T
Q  181 agattttcactatctaggcatccaacatttatgtcgacgaaccaaactcaata 233  Q
    || ||| | ||||| || || ||| |||||||||| ||||||||| |||||||    
T  16419396 aggtttccgctatcgagccacccaccatttatgtccacgaaccaagctcaata 16419448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 40718283 - 40718227
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 115  Q
    ||||||||| |||| | ||||||||||||||||| | ||||||||  ||||||||||    
T  40718283 tgtttataagtgagggcaatcatcacctcacaaaccggttttgtggagttgtgttag 40718227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 20225049 - 20225142
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctct 152  Q
    ||||||||||||||   |||| ||||||||||| ||  ||||||| ||||||||||| ||||||||||||||  || |||||||||||| ||||    
T  20225049 tgtttataaatgaggacaatcctcacctcacaagtcgattttgtggggttgtgttaggttcaaccacgatttctaaaatgatatcatagcctct 20225142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 1564626 - 1564558
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    |||| |||| ||||||  |||||||||| |||||||||||  |||||||||||||  ||||||||||||    
T  1564626 aatcctcacatcacaagacagttttgtggggttgtgttaggctcaaccacgatttctaagatgatatca 1564558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 24346791 - 24346639
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctgctacc 180  Q
    |||||||||||  | |||||||| ||||||||||||  ||||||||||||| |||||| ||||| || |||    |||||| ||||  | |||||||| |    
T  24346791 tcacctcacaagccggttttgtggggttgtgttagacccaaccacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatc 24346692  T
Q  181 agattttcactatctaggcatccaacatttatgtcgacgaaccaaactcaata 233  Q
    || ||| |  ||||  | || ||| |||||||||| ||||||||| |||||||    
T  24346691 aggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaata 24346639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 25258360 - 25258292
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    |||| ||||||||||| || |||||||| |||||||||| | |||||||||||||  |||||| |||||    
T  25258360 aatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatca 25258292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 25322150 - 25322082
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    |||| ||||||||||| || |||||||| |||||||||| | |||||||||||||  |||||| |||||    
T  25322150 aatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatca 25322082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 6919482 - 6919420
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    |||||||||||  |||||||||| |||||||||||  |||||||||||||| |||||| |||||    
T  6919482 tcacctcacaag-cagttttgtgaggttgtgttaggctcaaccacgatttttaagatggtatca 6919420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 33337514 - 33337460
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    |||| ||| |||||||| | |||||||| ||||||||||| ||||||||||||||    
T  33337514 aatcctcatctcacaaaccggttttgtggggttgtgttaggttcaaccacgattt 33337460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 38731914 - 38731821
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctct 152  Q
    ||||||||| |||||  |||| ||||||||||| ||  ||||||| |||||||||||   ||||||| ||||  |||||| |||||||| ||||    
T  38731914 tgtttataagtgagaacaatcctcacctcacaagtcgattttgtgaggttgtgttaggcacaaccaccatttctaagatgctatcatagcctct 38731821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 15439012 - 15439076
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 140  Q
    |||||||||||||||| |||||||| || |||||||||||    |||||||||||  ||||||||    
T  15439012 aatcatcacctcacaagtcagttttatggggttgtgttaggcctaaccacgatttataagatgat 15439076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 3157618 - 3157470
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctg 175  Q
    |||| |||||||||||  |||||||||| |||||||||||  |||||||| ||||  |||||||||||| || ||||   || ||| |||| || |||||    
T  3157618 aatcctcacctcacaagccagttttgtggggttgtgttaggctcaaccaccatttataagatgatatcagagcctct-ccaaaatccattggaccacctg 3157520  T
Q  176 ctaccagattttcactatctaggcatccaacatttatgtcgacgaaccaa 225  Q
    ||| ||| ||||| |||||  | || ||| |||||||||| |||||||||    
T  3157519 ctatcaggttttcgctatcgggacacccaccatttatgtccacgaaccaa 3157470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 8084392 - 8084441
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    |||||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  8084392 tcacctcacaaaccagttttgtgaggttgtgttaggtccaaccacgattt 8084441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 16050037 - 16050105
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacga 127  Q
    ||||||||| |||  | |||| ||||||||||| ||||||||||| ||||||||||||  |||||||||    
T  16050037 tgtttataagtgaaggcaatcctcacctcacaagtcagttttgtggggttgtgttagacccaaccacga 16050105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 34843125 - 34843195
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatt 129  Q
    ||||||||| || ||| |||| |||||||||||  | |||||||| |||||||||||| | ||||||||||    
T  34843125 tgtttataagtgggagcaatcctcacctcacaagccggttttgtggggttgtgttagactgaaccacgatt 34843195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 10615015 - 10614922
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctct 152  Q
    |||||| ||||| | | |||| |||||||||||  |  ||||||| |||||| ||||  |||||||||||||  ||||||||||||||| ||||    
T  10615015 tgtttacaaatgggggtaatcttcacctcacaagccgattttgtggggttgtattaggctcaaccacgatttataagatgatatcatagcctct 10614922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 6054177 - 6054262
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    ||||||||| ||||   ||||||||||||| || ||||||||||| | | |||||||| |||||||||||||  ||||||||||||    
T  6054177 tgtttataagtgaggacaatcatcacctcataagtcagttttgtgggatcgtgttagactcaaccacgatttctaagatgatatca 6054262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 27993719 - 27993627
Alignment:
Q  59 tgtttataaatgagagaaa-tcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtct 150  Q
    |||||||||||||| |||| || ||||||||||| | ||||||||| ||||||||||||| || | |||||||| || ||| ||||| |||||    
T  27993719 tgtttataaatgagggaaaatcctcacctcacaacttagttttgtgaggttgtgttagatccatctacgatttttaaaatggtatcagagtct 27993627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 10145804 - 10145735
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtct 150  Q
    ||||||||||| ||||||||||  |||||||||||  |||||||| ||||  |||||||||||| |||||    
T  10145804 tcacctcacaagtcagttttgtagggttgtgttaggctcaaccacaatttctaagatgatatcagagtct 10145735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 6543019 - 6542934
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    ||||||||| || | | ||||||||||||| ||  | |||||||| ||||||||||||  ||||||||||||  |||||| |||||    
T  6543019 tgtttataagtgggggcaatcatcacctcagaagccggttttgtggggttgtgttagacccaaccacgatttcaaagatggtatca 6542934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 9705028 - 9705113
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    ||||||||| || | | |||||||||||||||| || |||||||| |||||||||||   ||||||| ||||  |||||| |||||    
T  9705028 tgtttataagtgggggcaatcatcacctcacaagtcggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatca 9705113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 5398220 - 5398177
Alignment:
Q  96 gttttgtgcggttgtgttagattcaaccacgattttcaagatga 139  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  5398220 gttttgtggggttgtgttagattcaaccacgatttttaagatga 5398177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 35819179 - 35819039
Alignment:
Q  84 cctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctgctaccaga 183  Q
    ||||||||  |||||||||| |||||||||||   ||||||||||||| ||||||  |||| |||||||  ||||||| ||||  | |||||||| |||     
T  35819179 cctcacaagccagttttgtgaggttgtgttaggcccaaccacgatttttaagatggcatcagagtctct-ctaagatccattgggccacctgctatcagg 35819081  T
Q  184 ttttcactatctaggcatccaacatttatgtcgacgaaccaa 225  Q
    ||| | |||||  | || ||| |||||||||| |||||||||    
T  35819080 tttccgctatcgggtcacccaccatttatgtccacgaaccaa 35819039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 21750331 - 21750268
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    |||||||||||| |||||||||| ||||||||||||  ||| ||||| ||| |||||| |||||    
T  21750331 tcacctcacaaaccagttttgtgaggttgtgttagacccaatcacgaattttaagatggtatca 21750268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 30305299 - 30305354
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatttt 131  Q
    |||||||||||||||||||| |||||||  |||||||||   ||||||||||||||    
T  30305299 aatcatcacctcacaaatcaattttgtggagttgtgttatgctcaaccacgatttt 30305354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 36685951 - 36685880
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    |||||||||||| | |  ||| ||||||||||| ||||||||||| |||||| |||||  ||||||||||||    
T  36685951 tgtttataaatgggggttatcctcacctcacaagtcagttttgtggggttgtattagacccaaccacgattt 36685880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 18528276 - 18528222
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    |||| ||||||||||||||  ||||||  ||||||||||||| ||||||||||||    
T  18528276 aatcctcacctcacaaatcgattttgtagggttgtgttagatccaaccacgattt 18528222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 43743251 - 43743304
Alignment:
Q  83 acctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaaga 136  Q
    |||||||||||| |||||||| ||||||||||||  ||| |||||||| |||||    
T  43743251 acctcacaaatcggttttgtggggttgtgttagacccaaacacgatttccaaga 43743304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 18528516 - 18528448
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    |||| |||||||||||||| |||||||| | || |||||||  ||||||||||||  |||||| |||||    
T  18528516 aatcctcacctcacaaatcggttttgtgagattttgttagacccaaccacgatttctaagatggtatca 18528448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 35797054 - 35796998
Alignment:
Q  58 atgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgtta 114  Q
    |||||||||| || | | |||| |||||||||||| |||||||||| ||||||||||    
T  35797054 atgtttataagtgggggcaatcctcacctcacaaaccagttttgtggggttgtgtta 35796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 13574997 - 13574831
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaag 158  Q
    ||||||||| || | |||||| |||||||||||  |||||||||| |||||||||||   ||||||| ||||  || ||| ||||| || |||  |||||    
T  13574997 tgtttataagtgggggaaatcctcacctcacaagccagttttgtggggttgtgttaggcccaaccacaatttctaatatggtatcaaagcctcagttaag 13574898  T
Q  159 atctattgaactacctgctaccagattttcactatctaggcatccaacatttatgtcgacgaaccaa 225  Q
    ||| ||||  | |||||||| ||| ||| | |||||  | || ||| |||||||||| |||||||||    
T  13574897 atccattgggccacctgctatcaggtttccgctatcgtgtcacccaccatttatgtccacgaaccaa 13574831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 20303123 - 20303059
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 140  Q
    |||| |||||||||||| | |||||||| | |||||||||  |||||||||||||| ||||||||    
T  20303123 aatcctcacctcacaaaccggttttgtgggattgtgttaggctcaaccacgatttttaagatgat 20303059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 37246907 - 37246764
Alignment:
Q  81 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctgctacc 180  Q
    |||||||||||||| | ||||||  ||||||||||| ||||| | |||||| |||||| ||||| ||||| | | |||||  |||| || ||||||||      
T  37246907 tcacctcacaaatcggatttgtggagttgtgttagactcaacaatgatttttaagatggtatcaaagtctat-tcaagattcattggaccacctgctatt 37246809  T
Q  181 agattttcactatctaggcatccaacatttatgtcgacgaaccaa 225  Q
    || |||||  ||||  | |||||| |||||||||| |||||||||    
T  37246808 aggttttcgttatcgggtcatccaccatttatgtcaacgaaccaa 37246764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 54567900 - 54567985
Alignment:
Q  59 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    ||||||||| || | |||||| |||||||||||  | |||||||| |||||||||||   ||||||||||||  |||||| |||||    
T  54567900 tgtttataagtgggggaaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatca 54567985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 16162979 - 16163026
Alignment:
Q  97 ttttgtgcggttgtgttagattcaaccacgattttcaagatgatatca 144  Q
    ||||||| |||||||||||| |||||||| ||||| ||||||||||||    
T  16162979 ttttgtggggttgtgttagactcaaccacaatttttaagatgatatca 16163026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 38733185 - 38733252
Alignment:
Q  85 ctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctct 152  Q
    ||||||| || |||||||| | ||||||||| ||||||||||||||  |||||| ||||| |||||||    
T  38733185 ctcacaagtcggttttgtgagattgtgttaggttcaaccacgatttctaagatggtatcagagtctct 38733252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 46176751 - 46176806
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatttt 131  Q
    |||||||| ||||||||||||||||||| | |||||||||  ||||||| ||||||    
T  46176751 aatcatcatctcacaaatcagttttgtgggtttgtgttaggctcaaccatgatttt 46176806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 25145544 - 25145490
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 130  Q
    |||| ||||||||||| || |||||||| ||||||||||||  ||||||||||||    
T  25145544 aatcctcacctcacaagtcggttttgtgaggttgtgttagacccaaccacgattt 25145490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 27413372 - 27413516
Alignment:
Q  76 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctctattaagatctattgaactacctg 175  Q
    |||| |||||||||||  |  ||||||| ||||||||||| | ||||||||||||  |||||||||||| || ||||   ||||||||||  || |||||    
T  27413372 aatcctcacctcacaagccgattttgtgaggttgtgttaggtccaaccacgatttctaagatgatatcagagcctct-ccaagatctattagaccacctg 27413470  T
Q  176 ctaccagattttcactatctaggcatccaacatttatgtcgacgaa 221  Q
     || ||||||| | |||||  | || ||| |||||||||| |||||    
T  27413471 ttatcagatttccgctatcgggccacccaccatttatgtccacgaa 27413516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 9499290 - 9499346
Alignment:
Q  96 gttttgtgcggttgtgttagattcaaccacgattttcaagatgatatcatagtctct 152  Q
    |||||||| ||||||||| || |||||||||||||  || ||||||||| |||||||    
T  9499290 gttttgtggggttgtgttcgactcaaccacgatttctaaaatgatatcagagtctct 9499346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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