View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_10 (Length: 297)
Name: NF1437_low_10
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_10 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 12610240 - 12610506
Alignment:
| Q |
19 |
cttcatcactcttttatcccttaccaactctgacatcgcccaaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaagaaaat |
118 |
Q |
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| T |
12610240 |
cttcatcactcttttatcccttaccaactctgacattgcccaaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaagaaaat |
12610339 |
T |
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| Q |
119 |
gcaaggatatcaaaagagagagctaaaagagatattttgatggcatccaataggtcatcacaaggttttaaatcgaggttgcatcacaatccttgataat |
218 |
Q |
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| T |
12610340 |
gcaaggatatcaaaagagagagctaaaagagatattttgatggcatccaataggtcatcacaaggttttaaatcgaggttgcatcacaatccttgataat |
12610439 |
T |
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| Q |
219 |
gc-aaaaaattgcaaacatgtattctgattctatcgctgtcatcaagacatc-aaaaaccttgaatt |
283 |
Q |
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| T |
12610440 |
gcaaaaaaattgcaaacatgtattctgattctatcgctgtcatcaagacatcaaaaaaccttgaatt |
12610506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 12637333 - 12637426
Alignment:
| Q |
19 |
cttcatcactcttttatcccttaccaactctgacatcgcccaaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaa |
112 |
Q |
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| T |
12637333 |
cttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatgatgtcctgaaaa |
12637426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 15885627 - 15885548
Alignment:
| Q |
19 |
cttcatcactcttttatcccttaccaactctgacatcgcccaaactatagtagaagctgatgtatcacctccagcaccaa |
98 |
Q |
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| T |
15885627 |
cttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaa |
15885548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 62488 - 62596
Alignment:
| Q |
19 |
cttcatcactcttttatcccttaccaactctgacatcgcccaaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaa-gaaaa |
117 |
Q |
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||||||||||||| ||| ||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||| || | ||||||| |||| |
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| T |
62488 |
cttcatcactcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatcacctccagcaccaaacatgtcctgaaaattaaaa |
62587 |
T |
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| Q |
118 |
tgcaaggat |
126 |
Q |
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||||||||| |
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| T |
62588 |
tgcaaggat |
62596 |
T |
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