View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_12 (Length: 279)
Name: NF1437_low_12
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 44567687 - 44567494
Alignment:
| Q |
1 |
agtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagac |
100 |
Q |
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| T |
44567687 |
agtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagac |
44567588 |
T |
|
| Q |
101 |
cagcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaagttagacatggtatatttgtgatat |
194 |
Q |
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| T |
44567587 |
cagcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaaattagacatggtatatttgtgatat |
44567494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 36029121 - 36029299
Alignment:
| Q |
3 |
tccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagacca |
102 |
Q |
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||||| ||| |||||||| ||||||||||| | |||| |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
36029121 |
tccaattattatgatattgcgagagcttccagcctcactatagcgtagattggacaagcccaatgctgtaagcattgcccacataaagcagaggagacca |
36029220 |
T |
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| Q |
103 |
gcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgtt-atatagtaaaagtaaagttagacatgg |
180 |
Q |
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| T |
36029221 |
gcaaccatgactccaggaattgaagcaatgaaccctccaaccttccctgttaatatagtaaaagcaaaattaaacatgg |
36029299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 20126569 - 20126433
Alignment:
| Q |
4 |
ccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagaccag |
103 |
Q |
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|||||||| |||||||| ||||||||||||| |||| | ||||||||||| |||||||| | ||||| ||||| |||||||| | |||||||||||||| |
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| T |
20126569 |
ccaactatgatgatattgcgagagcttccggcctcactgtagcgtagatttgacaagccccaagctgtgagcattgcccacatgaagcagaggagaccag |
20126470 |
T |
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| Q |
104 |
caaccatggcttcaggaattgaagcaatgaaccctcc |
140 |
Q |
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| T |
20126469 |
caaccataacttcaggaattgaagcaatgaaccctcc |
20126433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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