View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_13 (Length: 256)
Name: NF1437_low_13
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 8166324 - 8166548
Alignment:
| Q |
19 |
gaacttccactttttatcaattcacacgacattagttctatccaacatgaaagtaggtgtttagtcttccaatttactctagaactagaatgaagcacca |
118 |
Q |
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| T |
8166324 |
gaacttccactttttatcaattcacacgacattacttctatccaacatgaaagtaggtgtttagtcttccaatttactctagaactagaatgaagcacca |
8166423 |
T |
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| Q |
119 |
tgataagaannnnnnngtctgttccatgataagattttgatatatcctcaatcaactattgatgtcaatttgaattatatttgcgcaaccaacttactca |
218 |
Q |
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| T |
8166424 |
tgataagaatttttttgtctgttccatgataagattttg--atatcctcaatcaactattgatgtcaatttgaattatatttgcgcaaccaacttagtca |
8166521 |
T |
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| Q |
219 |
tacacattacttatatattaagaatta |
245 |
Q |
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||||| ||||||||||||| ||||||| |
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| T |
8166522 |
tacacgttacttatatattcagaatta |
8166548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 23866839 - 23866885
Alignment:
| Q |
21 |
acttccactttttatcaattcacacgacattagttctatccaacatg |
67 |
Q |
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| T |
23866839 |
acttccactttttttcaattcacacaacactagttctacccaacatg |
23866885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 9649939 - 9649892
Alignment:
| Q |
19 |
gaacttccactttttatcaattcacacgacattagttctatccaacatg |
67 |
Q |
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| T |
9649939 |
gaacttccacttttt-tcaattcacacaacactagttctacccaacatg |
9649892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 3693738 - 3693800
Alignment:
| Q |
21 |
acttccactttttatcaattcacacgacattagttctatccaacatgaaagtaggtgtttagtct |
85 |
Q |
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||||||||||||| |||||||||| |||||||||||| ||||||||| | | ||||||||||| |
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| T |
3693738 |
acttccacttttt--caattcacacaacattagttctacccaacatgagaatttgtgtttagtct |
3693800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 13520964 - 13520917
Alignment:
| Q |
19 |
gaacttccactttttatcaattcacacgacattagttctatccaacatg |
67 |
Q |
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||||||||||||||| ||||||||||| ||| |||||||| |||||||| |
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| T |
13520964 |
gaacttccacttttt-tcaattcacacaacactagttctacccaacatg |
13520917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 30659272 - 30659319
Alignment:
| Q |
19 |
gaacttccactttttatcaattcacacgacattagttctatccaacatg |
67 |
Q |
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||||||||||||||| ||||||||||| ||| |||||||| |||||||| |
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| T |
30659272 |
gaacttccacttttt-tcaattcacacaacactagttctacccaacatg |
30659319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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