View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_15 (Length: 237)
Name: NF1437_low_15
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 48303325 - 48303114
Alignment:
| Q |
11 |
cacagacgacacaacagagaagaatctaaacgcaccaacacgaacctacgttcgcgacgcaaaagcaatggctgcaacaccagcagacgtgaaagagtat |
110 |
Q |
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| T |
48303325 |
cacagacgacacaacagagaagaatctaaacgcaccaacacgaacctacgttcgcgacgcaaaagcaatggctgcaacaccagcagacgtgaaagagtat |
48303226 |
T |
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| Q |
111 |
ccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaa |
210 |
Q |
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| T |
48303225 |
ccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaa |
48303126 |
T |
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| Q |
211 |
ggaagagagaag |
222 |
Q |
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| T |
48303125 |
ggaagagagaag |
48303114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 3745018 - 3744913
Alignment:
| Q |
117 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
216 |
Q |
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| T |
3745018 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
3744919 |
T |
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| Q |
217 |
gagaag |
222 |
Q |
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| T |
3744918 |
gggaag |
3744913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 10462138 - 10462267
Alignment:
| Q |
93 |
gcagacgtgaaagagtatccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgc |
192 |
Q |
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| T |
10462138 |
gcagacgtgaaggaataccaaaactcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtgg |
10462237 |
T |
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| Q |
193 |
ttctgataagcggtgaaaggaagagagaag |
222 |
Q |
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| T |
10462238 |
ttgtgataaccggcgagaggaagagggaag |
10462267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 10539986 - 10539857
Alignment:
| Q |
93 |
gcagacgtgaaagagtatccaaactcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgc |
192 |
Q |
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| T |
10539986 |
gcagacgtgaaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtgg |
10539887 |
T |
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| Q |
193 |
ttctgataagcggtgaaaggaagagagaag |
222 |
Q |
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| T |
10539886 |
ttgtgataaccggcgagaggaagagggaag |
10539857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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