View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1437_low_17 (Length: 235)
Name: NF1437_low_17
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15379590 - 15379810
Alignment:
| Q |
1 |
aatgtcaatcacgagtagttgagatggttgggaagaattaacttttgtcaacaaaatgttgtgaagtactagtaatagtgaatttgtgttgtattgtact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15379590 |
aatgtcaatcacgagtagttgagatggttgggaagaattaatttgtgtcaacaaaatgttgtgaagtactagtaatagtgaatttgtgttgtattgtact |
15379689 |
T |
|
| Q |
101 |
ttaacttttcttcaatttgtgaatatatttttgcagaggccagcattcttgcatattggccctcatgcattgctgccgcggctatactctatgcagctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15379690 |
ttaacttttcttcaatttgtgaatatatttttgcagaggccagcattcttgcatattggccctcatgcattgctgccgcggctatactctatgcagctaa |
15379789 |
T |
|
| Q |
201 |
cgaaattcctaattggtctct |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15379790 |
cgaaattcctaattggtctct |
15379810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 7706683 - 7706544
Alignment:
| Q |
53 |
aaaatgttgtgaagtactagtaatagtgaatttgtgttgtattgtactttaacttttcttcaatttgtgaatatatttttgcagaggccagcattcttgc |
152 |
Q |
| |
|
|||||| ||| || |||||||| |||| || |||||||||| | |||||||||||| |||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
7706683 |
aaaatgatgtaaaatactagtactagttaacttgtgttgtaatatactttaactttatttcagcttgtgaatatatttttgcagaggccagaattattgg |
7706584 |
T |
|
| Q |
153 |
atattggccctcatgcattgctgccgcggctatactctat |
192 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
7706583 |
atgttggccctcatgcattactgccgcggctataccctat |
7706544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 26436223 - 26436162
Alignment:
| Q |
158 |
ggccctcatgcattgctgccgcggctatactctatgcagctaacgaaattcctaattggtct |
219 |
Q |
| |
|
|||| |||||||||||||| || || ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26436223 |
ggccatcatgcattgctgcagctgccatactctctgcagctaatgaaattcctaattggtct |
26436162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University