View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_19 (Length: 207)
Name: NF1437_low_19
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 44567101 - 44567278
Alignment:
| Q |
23 |
tggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgggtgcgtgtc |
122 |
Q |
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| T |
44567101 |
tggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgggtgcgtgtc |
44567200 |
T |
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| Q |
123 |
ttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatttgcatctacctttgctactcca |
200 |
Q |
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| T |
44567201 |
ttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatttgcatctacctttgttactcca |
44567278 |
T |
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Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 36031642 - 36031503
Alignment:
| Q |
23 |
tggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttcaattgggtgcgtgtc |
122 |
Q |
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| T |
36031642 |
tggggtactggaactggatctaccactttaactgaaaatgttcatacaattgctgtgactaaaatgggaagccgcagagcagttcaattgggtgcatgta |
36031543 |
T |
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| Q |
123 |
ttctcatagtattatctctatttggtaagtatctattatc |
162 |
Q |
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| T |
36031542 |
ttctgatagtgttatctctcgtgggtaagtatctattatc |
36031503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 16069436 - 16069361
Alignment:
| Q |
103 |
agttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatt |
178 |
Q |
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| T |
16069436 |
agttcaattaggtgcatgtcttctgacagtattatctctctttgctaagtatctattatcattttgttgtttcatt |
16069361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 20124200 - 20124273
Alignment:
| Q |
23 |
tggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccg |
96 |
Q |
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||||| ||||||| ||||| |||||| |||||||||||||||| |||||||| | ||| |||||||||||||| |
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| T |
20124200 |
tggggaactggaactggatctacaactttaaccgaaaatgttcatacaattgccgtgactaaaatgggaagccg |
20124273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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