View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1437_low_2 (Length: 391)
Name: NF1437_low_2
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 10593617 - 10593246
Alignment:
| Q |
1 |
tagacccacaatgccttcaaagatcagaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatga |
100 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10593617 |
tagacccacaatgccttaaaagatcaaaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatga |
10593518 |
T |
|
| Q |
101 |
ttccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagcagcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10593517 |
ttccaggtggaatcgatatcaagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccattccgtagcagcag |
10593418 |
T |
|
| Q |
201 |
caatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaattaacatgaaatcttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10593417 |
caatgttcaactttggccgagaatacccattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaattaacatgaaatcttt |
10593318 |
T |
|
| Q |
301 |
acgaactataggttgggaaaacacaaaccggtaactagccaacttgtttcttgagaaatggtctgtgtatcc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10593317 |
acgaactataggttgggaaaacacaaaccggtaactagccaacttgtttcttgagaaatggtctgtgtatcc |
10593246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 14375686 - 14375501
Alignment:
| Q |
96 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||| ||||||||| |||| |
|
|
| T |
14375686 |
tatgattccaggtggaatcgatatcaagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaacggaaacat----aaccattccatagc |
14375591 |
T |
|
| Q |
196 |
agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
285 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
14375590 |
agcagcaatgttgaactttggccgagaatacccatcaatcagtttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaat |
14375501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 41449536 - 41449721
Alignment:
| Q |
96 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
|
|
| T |
41449536 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41449631 |
T |
|
| Q |
196 |
agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
285 |
Q |
| |
|
||||||||| || ||||||||||||||||||| || | |||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
41449632 |
agcagcaatattgaactttggccgagaatacccatcagtcagtttcatgtttgtttcatgaaatctagactgttgatcaaagcttctaat |
41449721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 41436323 - 41436508
Alignment:
| Q |
96 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
|
|
| T |
41436323 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaatgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41436418 |
T |
|
| Q |
196 |
agcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
285 |
Q |
| |
|
|||| |||| || ||||||||||||||||||| || | |||||||||| |||||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
41436419 |
agcaacaatattgaactttggccgagaatacccatcagtcagtttcatgtttgtttcataaaatctagactgttgatcaaagcttctaat |
41436508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 285
Target Start/End: Original strand, 14238453 - 14238637
Alignment:
| Q |
97 |
atgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | |||||||||| |||| ||||| |||| ||||| | ||| || ||||||||| ||||| |
|
|
| T |
14238453 |
atgattccaggtggaatcgatatcaagaatgccaaggaaaaggcaaatatgatggaagacaacatatctaagcgtaaagat----aaccattccatagca |
14238548 |
T |
|
| Q |
197 |
gcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
285 |
Q |
| |
|
|||| |||||| || |||||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14238549 |
gcagaaatgttgaaatttggccgagaatacccatcagtcagtttcatatttgtttcatgaaatcttgactgttgatcaaagcttctaat |
14238637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 32119103 - 32119255
Alignment:
| Q |
96 |
tatgattccaggtggaatc-gatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtag |
194 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |||| ||||| ||||||||||| |||| |||| || || || ||||||||||| ||| |
|
|
| T |
32119103 |
tatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctatacggagac----ataaccattccatag |
32119198 |
T |
|
| Q |
195 |
cagcagcaatgttcaactttggccgagaatacctattaatcagtttcatatttgttt |
251 |
Q |
| |
|
||||||||||||| ||||||||| |||||| | ||||||||| ||||||| ||||| |
|
|
| T |
32119199 |
cagcagcaatgttgaactttggcaaagaatatccattaatcaggttcatatatgttt |
32119255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 32118988 - 32119075
Alignment:
| Q |
17 |
tcaaagatcagaaaaattacact---gagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatgat |
101 |
Q |
| |
|
||||| ||||||||||| ||||| |||| ||||||||||| ||||| ||| |||||| | |||||| ||||||| |||||||||| |
|
|
| T |
32118988 |
tcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcaatacacaagcagagtaaattttgattgatatatgat |
32119075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University