View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_3 (Length: 383)
Name: NF1437_low_3
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 28606876 - 28607229
Alignment:
| Q |
18 |
aagttaatcacagatatgttacttcatcatgacaaaaccttcaaaagatttgtgagtgtagtgtgaagttgtaactatcgtatgtcttttttaatagtaa |
117 |
Q |
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| T |
28606876 |
aagttattcacagatatgttacttcatcatgacaaaaccttcaaaagatttgtgagtgtagtgtgaagttgtaactatcgtatgtcttttttaatagtaa |
28606975 |
T |
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| Q |
118 |
aagttgatccgtttgataaggattcaagtcatattgttcacttgcatcatccgtttaaatttatatgttgatatattatttaactatatgtcaataaaat |
217 |
Q |
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| T |
28606976 |
aagttgatccgtttgataaggattcaagtcatattgttcacttgcatcatccgtttaaatttatatgttgatatattatttaactatatgtcaataaaat |
28607075 |
T |
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| Q |
218 |
tcgaataatctgataaaatatgtaaaccacacttaattatttggattaatttggtaggatgctttttagaaaagcaatcgtcacacccagctaaaatgca |
317 |
Q |
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| T |
28607076 |
tcgaataatcttataaaatatgtaaaccacacttaattatttggattaatttggtaggatgctttttagaaaagcaatcgtcacacccagctaaaatgca |
28607175 |
T |
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| Q |
318 |
tgatcaagattttgtgcaagaaatacaagctttcaatttactcaagtttatatt |
371 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28607176 |
tgatcaagatattgtgcaagaaatacaagctttcaatttactcaaatttatatt |
28607229 |
T |
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