View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_4 (Length: 356)
Name: NF1437_low_4
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 356
Target Start/End: Original strand, 52600548 - 52600883
Alignment:
| Q |
21 |
tctatcaggtataatataggtactaaatctaatgatacttactttgatacacaattttgacctgacaatgataacctgaattcttaaagtcttaatcatg |
120 |
Q |
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| T |
52600548 |
tctatcaggtataatataggtactaaatctaatgatacttactttgatacacaattttgacctgacaatgagaacctgaattcttaaagtcttaatcatg |
52600647 |
T |
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| Q |
121 |
atgcaccaatgttactattatattacataatatcaaattgagttttctacctttggtaattgtggctcatataaattcacttacttattgaggactactt |
220 |
Q |
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| T |
52600648 |
atgcaccaatgttactattatattacataatatcaaattgagttttctacctttggtaattgtggctcatataaattcacttacttattgaggactactt |
52600747 |
T |
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| Q |
221 |
gtgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttgacaaatctcaccaaggagaaagagaatttctagcagaag |
320 |
Q |
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| T |
52600748 |
gtgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttgacaaatctcaccaaggagaaagagaatttctagcagaag |
52600847 |
T |
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| Q |
321 |
tgagaatgatcacaagtatccagcataaaaatcttg |
356 |
Q |
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| T |
52600848 |
tgagaatgatcacaagcatccagcataaaaatcttg |
52600883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 16912478 - 16912348
Alignment:
| Q |
222 |
tgttttgacagggaaagttggcagatggaaggctagttgcttgtaagaaattgtctcttgacaaatctcaccaaggagaaagagaatttctagcagaagt |
321 |
Q |
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| T |
16912478 |
tgttttgatagggaaagttggaagatggaaggatcattgctgttaaggcattatctcttaacaaatctcaacaaggagaaagagaatttttggctgaggt |
16912379 |
T |
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| Q |
322 |
gagaatgatcacaagtatccagcataaaaat |
352 |
Q |
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| T |
16912378 |
taaattgatcacaagtatccaacacaaaaat |
16912348 |
T |
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