View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_5 (Length: 327)
Name: NF1437_low_5
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 18950553 - 18950249
Alignment:
| Q |
8 |
aaattaaatacagatnnnnnnntacatcaaatctttataagatcctctcaaaaaataaaaccttattagtttgttacacttgacgctcggtaatatataa |
107 |
Q |
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| T |
18950553 |
aaattaaatacagataaaaaaatacatcaaatctt-attagatcctctcaaaaaataaaaccttattagtttgttacacttcatgctcgttaatatataa |
18950455 |
T |
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| Q |
108 |
actaaccctaatctaactttttctcactcaaaacctaaactttactataaaactattctttttctaagctcatcgcacatcaaagtgccgtagagttttc |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18950454 |
actaaacctaatctaactttttctcactcaaaacctaaacgttactataacactattctttttctaagctcatcgcacatcaaagtgccgtagagttttc |
18950355 |
T |
|
| Q |
208 |
tttctttttcagaattccaatcaagctacgatcatgacaaaaacgtgcttgctgagtgaagagttatcaaaaccaatcattgtccgtgaagtttgggcac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18950354 |
tttctttttcagaattccaatcaagctacgatcatgacaaaaacgtgcatgctgagtgaagagttatcaaaaccaatcattgtccgtgaagtttgggcac |
18950255 |
T |
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| Q |
308 |
ataact |
313 |
Q |
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|||||| |
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| T |
18950254 |
ataact |
18950249 |
T |
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