View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_6 (Length: 325)
Name: NF1437_low_6
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 15475261 - 15474962
Alignment:
| Q |
11 |
cagagaaagaaaaacagagagaaaacaaacatggtggtacagaggcaaaactacaacaacaatgttcatgtcttagtgattccatacccagcacaaggac |
110 |
Q |
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| T |
15475261 |
cagagaaagaaaaacagagagaaaacaaacatggtggtacagaggcaaaactacaacaacaatgttcatgtcttagtgattccatacccagcacaaggac |
15475162 |
T |
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| Q |
111 |
acattagtccactaatccaattctcaaaaagattagtttcaaaaggcatcaaaacaacatttgcaacaacccattacactgttaaatccatcactgcacc |
210 |
Q |
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| T |
15475161 |
acattagtccactaatccaattctcaaaaagattagtttcaaaaggcatcaaaacaacatttgcaacaacccattacactgttaaatccatcactgcacc |
15475062 |
T |
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| Q |
211 |
aaacatctccgtcgaaccaatctctgatgggttcgacgaatccggtttttcacaagccaaaaatgttgaactctttctcaattcattcaaaaacaatggt |
310 |
Q |
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| T |
15475061 |
aaacatctccgtcgaaccaatctctgatgggttcgacgaatccggtttttcacaagccaaaaatgttgaactctttctcaattcattcaaaaccaatggt |
15474962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 63 - 310
Target Start/End: Complemental strand, 15467658 - 15467411
Alignment:
| Q |
63 |
acaacaacaatgttcatgtcttagtgattccatacccagcacaaggacacattagtccactaatccaattctcaaaaagattagtttcaaaaggcatcaa |
162 |
Q |
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| T |
15467658 |
acaacaacaacgttcatgtgttagtgatcccatatccagcacaaggacacattagtccactaatccaattctcaaaacgattggtttcaaaaggcatcaa |
15467559 |
T |
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| Q |
163 |
aacaacatttgcaacaacccattacactgttaaatccatcactgcaccaaacatctccgtcgaaccaatctctgatgggttcgacgaatccggtttttca |
262 |
Q |
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| T |
15467558 |
aacaacatttgcaacaacacattacactgttcaatccataaccgcaccaaacgtatccgtcgaaccaatctctgatgggttcgacgaatccggttttaca |
15467459 |
T |
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| Q |
263 |
caagccaaaaatgttgaactctttctcaattcattcaaaaacaatggt |
310 |
Q |
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| T |
15467458 |
caagccaacaatgttgaactctttctcacttcattcaaaaccaatggt |
15467411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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