View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1437_low_9 (Length: 302)
Name: NF1437_low_9
Description: NF1437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1437_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 27358923 - 27359196
Alignment:
| Q |
19 |
ccttgaccatcgcaataaagctcaacgcgaccatcttcatctcggcggagacgggctgccattggatagaacgggaccagcatcttgcttagagcttcct |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27358923 |
ccttgaccatcgcaataaagctcaacacgaccatcttcatctcggcggagacgggctgccattggatagaacgggaccagcaccttgcttagagcttcct |
27359022 |
T |
|
| Q |
119 |
tcataatcttagcatcgaagaaattggacgtgtcgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27359023 |
tcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagtt |
27359122 |
T |
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| Q |
219 |
ccataacgcctttcgtggtgtctcctccgccggacgcaccactgtcgactctttcacgttgattaacatctctg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
27359123 |
ccataacgcctttcgtggtgtctcctccgccggacgcaccaccgtcgactctttcacgttgatcaacatctctg |
27359196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 45408183 - 45407908
Alignment:
| Q |
19 |
ccttgaccatcgcaataaagctcaacgcgaccatcttcatctcggcggagacgggctgccattggatagaacgggaccagcatcttgcttagagcttcct |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
45408183 |
ccttgaccatcgcaataaagctcaatgcgaccatcttcatctcggcggagacgggctgccattggatagaacaggaccagcaccttgcttagagcttcct |
45408084 |
T |
|
| Q |
119 |
tcataatcttagcatcgaagaaattggacgtgtcgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45408083 |
tcataatcttagcatcgaagaaattggacgtgccgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggaatt |
45407984 |
T |
|
| Q |
219 |
ccataacgcctttcgtggtgtctcctccgccggacgcaccactgtcgactctttcacgttgattaacatctctgct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
45407983 |
ccataacgcctttcgtggtgtctcctccgccggacgcaccaccatcgactctttcacgttgatcaacatctctgct |
45407908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 1127766 - 1127564
Alignment:
| Q |
19 |
ccttgaccatcgcaataaagctcaacgcgaccatcttcatctcggcggagacgggctgccattggatagaacgggaccagcatcttgcttagagcttcct |
118 |
Q |
| |
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||||||||||| |||| || |||||| |||||||||||||| || || ||||| | ||||||||||| |||||||| |||| |||||| |||||||| | |
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| T |
1127766 |
ccttgaccatcacaatcaatctcaacacgaccatcttcatcacgacgaagacgaccagccattggataaaacgggacaagcaccttgctaagagcttctt |
1127667 |
T |
|
| Q |
119 |
tcataatcttagcatcgaagaaattggacgtgtcgtttggcctgtaaaagtacacgcttggtgtgtgaaaatttggaaccaccaagtcgacgttggagtt |
218 |
Q |
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| | || ||| ||||| ||||||||||| | | || || || |||||||| || |||||||| || ||||| || |||||||| || |||||||| || |
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| T |
1127666 |
taagaaccttggcatcaaagaaattggaagcaccattaggtctataaaagtaaacacttggtgtatggaaattcggtaccaccaaatcaacgttggaatt |
1127567 |
T |
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| Q |
219 |
cca |
221 |
Q |
| |
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||| |
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|
| T |
1127566 |
cca |
1127564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 1108167 - 1108092
Alignment:
| Q |
76 |
gccattggatagaacgggaccagcatcttgcttagagcttccttcataatcttagcatcgaagaaattggacgtgt |
151 |
Q |
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|||||||||||||||||||| |||| || ||| |||||||||||||||||||| |||| |||||||||||| |||| |
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| T |
1108167 |
gccattggatagaacgggacaagcacctagctgagagcttccttcataatcttggcattgaagaaattggaagtgt |
1108092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 31967203 - 31967273
Alignment:
| Q |
76 |
gccattggatagaacgggaccagcatcttgcttagagcttccttcataatcttagcatcgaagaaattgga |
146 |
Q |
| |
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|||||||||||||| | ||| |||| ||||| |||||||||||||||||||| | |||||||| ||||| |
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| T |
31967203 |
gccattggatagaatgagacaagcactttgctgagagcttccttcataatcttggtgtcgaagaatttgga |
31967273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 32016524 - 32016592
Alignment:
| Q |
78 |
cattggatagaacgggaccagcatcttgcttagagcttccttcataatcttagcatcgaagaaattgga |
146 |
Q |
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||||||||||||| ||| |||| ||| | |||||||||||||||||||| || || ||||||||||| |
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| T |
32016524 |
cattggatagaacaagacaagcaccttaatgagagcttccttcataatcttggcgtccaagaaattgga |
32016592 |
T |
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