View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14380_high_1 (Length: 461)
Name: NF14380_high_1
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14380_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 3 - 446
Target Start/End: Complemental strand, 3903903 - 3903460
Alignment:
| Q |
3 |
aagaagtatacaaagtactcttatttcttttgtaatatgtgtgtatgtaagaaataaaagaactctattccaacaatgtcataatcaatgcttaatctgg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3903903 |
aagaagtatacaaagtactcttatttcttttgtaatatgtgtgtatgtaagaaataaaagaactctattccaacaatgtcataatcaatgcttaatctgg |
3903804 |
T |
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| Q |
103 |
tatcagttgagatgttttattttaggcttaacaatgagtaggtaggtttgtgcnnnnnnngttgttgctaatttcacgatcatgaagatgattatctact |
202 |
Q |
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| T |
3903803 |
tatcagttgagatgttttattttaggcttaacaatgagtaggtaggtttgtgctttttttgttgttgctaatttcacgatcatgaagatgattatctact |
3903704 |
T |
|
| Q |
203 |
tgatgtgttccacctaatttcaaaactaatgcgtcaacatatagaaaatgatgttatatttcttgtaaatttgcatattaatataggttcaattgtatat |
302 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3903703 |
tgatgtgttctacctaatttcaaaactaatgcgtcaacatatagaaaatgatgttatatttcttgtaaatttgcatattaatataggttcaattgtatat |
3903604 |
T |
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| Q |
303 |
ataaagcttataggtgtcccccaaatatgtccattctaataggtgagatactttttcaatgtcaccaacaaattagattgtgttttggcgatacctatct |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3903603 |
ataaagcttataggtgtcccccaaatatgtccattctaataggtgagatactttttcaatgtcaccaacaaattagattgtgttttggcgatacctatct |
3903504 |
T |
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| Q |
403 |
ttccttttaattatttagcttagaccaataggaaaaggaaaatc |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3903503 |
ttccttttaattatttagcttagaccaataggaaaaggaaaatc |
3903460 |
T |
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