View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14380_high_2 (Length: 458)

Name: NF14380_high_2
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14380_high_2
NF14380_high_2
[»] chr3 (8 HSPs)
chr3 (19-322)||(24315597-24315900)
chr3 (361-452)||(24341590-24341678)
chr3 (267-318)||(24320596-24320647)
chr3 (327-366)||(24320649-24320688)
chr3 (374-429)||(13721228-13721283)
chr3 (337-366)||(24315534-24315563)
chr3 (200-289)||(40087083-40087172)
chr3 (369-429)||(5381456-5381516)
[»] chr1 (2 HSPs)
chr1 (199-286)||(20180348-20180435)
chr1 (369-429)||(14474986-14475046)
[»] scaffold0163 (1 HSPs)
scaffold0163 (197-286)||(22442-22531)
[»] scaffold0015 (1 HSPs)
scaffold0015 (369-429)||(27638-27698)
[»] chr8 (1 HSPs)
chr8 (369-429)||(88391-88451)
[»] chr7 (1 HSPs)
chr7 (369-429)||(11713245-11713305)
[»] chr6 (1 HSPs)
chr6 (369-429)||(16775880-16775940)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 24315597 - 24315900
Alignment:
Q  19 aacctcatcctcttcgattccctcaagaacgtcttagagttatgtctggattgatcaaatcgaaaaacctcctataaatgacaacactgtgcatatcatt 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  24315597 aacctcatcctcttcgattccctcaagaacgtctcagagttatgtctggaatgatcaaatcaaaaaacctcctataaatgacaacattgtgcatatcatt 24315696  T
Q  119 gattctgatggtgaaaaaacaaaacctagggttgttgaaacggttgaaacacaacctcagaaatcacctcccaaaaccctcaagagaaaggttgttgaaa 218  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24315697 gattctgatggtgaaagaacaaaacctagggttgttgaaatggttgaaactcaacctcagaaatcacctcccaaaaccctcaagagaaaggttgttgaaa 24315796  T
Q  219 ccgctgctgaatcctctcaccctcctttgaaaaaccccaagaagtctatttttaaaaagaggaaacaaacttttcaatcatcccctcctaaacctcacaa 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24315797 ccgctgctgaatcctctcaccctcctttgaaaaaacccaagaagtctatttttaaaaagaggaaacaaacttttcaatcatcccctcctaaacctcacaa 24315896  T
Q  319 gaag 322  Q
    ||||    
T  24315897 gaag 24315900  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 24341590 - 24341678
Alignment:
Q  361 gcttttatgcagcggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgacagcatgatgtgtagccttcctatg 452  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||   ||| ||||||||||||||||||    
T  24341590 gcttttatgcagcggtgcaacgagtatgaaaaatgtttttcctcaagtaatgctcttcttgtgctga---catcatgtgtagccttcctatg 24341678  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 24320647 - 24320596
Alignment:
Q  267 tttttaaaaagaggaaacaaacttttcaatcatcccctcctaaacctcacaa 318  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  24320647 tttttaaaaagaggaaacaaactgctcaatcatcccctcctaaacctcacaa 24320596  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 24320649 - 24320688
Alignment:
Q  327 aatcttcttggattttgaaacagatgaagaaggggctttt 366  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24320649 aatcttcttggattttgaaacagatgaagaaggggctttt 24320688  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 13721228 - 13721283
Alignment:
Q  374 ggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgaca 429  Q
    ||||||| ||||||| |||||||||| ||||||  ||||||||||||| |||||||    
T  13721228 ggtgcaacgagtatggaaaatgtttttcctcaaccaatgctcttcttgagctgaca 13721283  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 366
Target Start/End: Complemental strand, 24315563 - 24315534
Alignment:
Q  337 gattttgaaacagatgaagaaggggctttt 366  Q
    ||||||||||||||||||||||||||||||    
T  24315563 gattttgaaacagatgaagaaggggctttt 24315534  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 40087172 - 40087083
Alignment:
Q  200 aagagaaaggttgttgaaaccgctgctgaatcctctcaccctcctttgaaaaaccccaagaagtctatttttaaaaagaggaaacaaact 289  Q
    ||||||||||  ||||||||||||| |||| | | ||  ||||||| |||| |  ||||||| ||| ||| |||||||||||||||||||    
T  40087172 aagagaaaggcagttgaaaccgctgttgaaacatatcctcctccttcgaaacagtccaagaaatctgtttctaaaaagaggaaacaaact 40087083  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 5381456 - 5381516
Alignment:
Q  369 gcagcggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgaca 429  Q
    |||| ||||||| ||||||| ||||| |||| ||||||  ||||||||||||| |||||||    
T  5381456 gcagtggtgcaacgagtatggaaaatatttttcctcaaccaatgctcttcttgagctgaca 5381516  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 20180348 - 20180435
Alignment:
Q  199 caagagaaaggttgttgaaaccgctgctgaatcctctcaccctcctttgaaaaaccccaagaagtctatttttaaaaagaggaaacaa 286  Q
    ||||||||||| |||||||||||| | |||| | ||||| ||||||| |||| |  ||||||| ||| ||| ||||||||||||||||    
T  20180348 caagagaaaggctgttgaaaccgcagttgaaacttctcatcctccttcgaaacagtccaagaaatctgtttctaaaaagaggaaacaa 20180435  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 14474986 - 14475046
Alignment:
Q  369 gcagcggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgaca 429  Q
    |||| ||||||| ||||||||||||||||||  |||||  ||||||||||||| |||||||    
T  14474986 gcagtggtgcaacgagtatgaaaaatgtttttgctcaaccaatgctcttcttgagctgaca 14475046  T

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Target: scaffold0163 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 22442 - 22531
Alignment:
Q  197 ctcaagagaaaggttgttgaaaccgctgctgaatcctctcaccctcctttgaaaaaccccaagaagtctatttttaaaaagaggaaacaa 286  Q
    ||||||||||||| |||||||||||| | |||| ||||||| |||| || |||| |  ||||||| ||| ||| ||||| ||||||||||    
T  22442 ctcaagagaaaggctgttgaaaccgcagttgaaacctctcatcctcattcgaaacagtccaagaaatctgtttctaaaaggaggaaacaa 22531  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 27638 - 27698
Alignment:
Q  369 gcagcggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgaca 429  Q
    |||| ||||||| ||||||| |||||||||| ||||||  ||||||||||||| |||||||    
T  27638 gcagtggtgcaacgagtatggaaaatgtttttcctcaaccaatgctcttcttgagctgaca 27698  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 88451 - 88391
Alignment:
Q  369 gcagcggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgaca 429  Q
    |||| ||||||| ||||||| |||||||||| ||||||  ||||||||||||| |||||||    
T  88451 gcagtggtgcaacgagtatggaaaatgtttttcctcaaccaatgctcttcttgagctgaca 88391  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 11713305 - 11713245
Alignment:
Q  369 gcagcggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgaca 429  Q
    |||| ||||||| ||||||| |||||||||| ||||||  ||||||||||||| |||||||    
T  11713305 gcagtggtgcaacgagtatggaaaatgtttttcctcaaccaatgctcttcttgagctgaca 11713245  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 16775880 - 16775940
Alignment:
Q  369 gcagcggtgcaaggagtatgaaaaatgttttccctcaagtaatgctcttcttgtgctgaca 429  Q
    |||| ||||||| ||||||| |||||||||| ||||||  ||||||||||||| |||||||    
T  16775880 gcagtggtgcaacgagtatggaaaatgtttttcctcaaccaatgctcttcttgagctgaca 16775940  T

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