View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14380_high_3 (Length: 439)
Name: NF14380_high_3
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14380_high_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 1355670 - 1355250
Alignment:
| Q |
1 |
gaaactaaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattactagtctactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1355670 |
gaaactaaaataaaaccttttattgcaaaacaaaaatcacaataaatatattgattatgagaagaagggaaacacatgatacaaaattactagtctactt |
1355571 |
T |
|
| Q |
101 |
agttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355570 |
agttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaa |
1355471 |
T |
|
| Q |
201 |
ctcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1355470 |
ctctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctca |
1355371 |
T |
|
| Q |
301 |
ctccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaat |
400 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1355370 |
ctccttggtacttcaacagccacttccttttccaccaatgcccttgaaaacaaacactggtcaagcaaataaggcagtgtcacaagaacatggccaaaat |
1355271 |
T |
|
| Q |
401 |
gaaccttttcaataacagaac |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1355270 |
gaaccttttcaataacagaac |
1355250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 92 - 421
Target Start/End: Complemental strand, 1362465 - 1362136
Alignment:
| Q |
92 |
agtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaac |
191 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1362465 |
agtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaac |
1362366 |
T |
|
| Q |
192 |
cttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
291 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362365 |
tttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
1362266 |
T |
|
| Q |
292 |
tcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1362265 |
tcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacat |
1362166 |
T |
|
| Q |
392 |
ggccaaaatgaaccttttcaataacagaac |
421 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |
|
|
| T |
1362165 |
ggccgaaatgaaccttctcaataacagaac |
1362136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 413
Target Start/End: Complemental strand, 20493182 - 20492929
Alignment:
| Q |
160 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
259 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| ||| |||| ||||| ||||| || || | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20493182 |
tattcattgtgaagatcttttgaaccgaaaatctttcccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatg |
20493083 |
T |
|
| Q |
260 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
359 |
Q |
| |
|
| || | ||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| | | |||| | | | | ||||||||||||||||| |
|
|
| T |
20493082 |
ttttggctatagagtccctagtaaaggacccatcttgctcattccttggtacctcaatagccaatttcctttcttctagttctcttgaaaacaaacattg |
20492983 |
T |
|
| Q |
360 |
gtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttcaat |
413 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||| |||||||||| ||| ||||| |
|
|
| T |
20492982 |
atcaattaaataaggcaatgtcacaagtacatgcccaaaatgaagcttctcaat |
20492929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 111 - 413
Target Start/End: Complemental strand, 11532409 - 11532107
Alignment:
| Q |
111 |
attggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgca |
210 |
Q |
| |
|
||||||| |||| |||||||| | ||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
11532409 |
attggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggca |
11532310 |
T |
|
| Q |
211 |
ttgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggta |
310 |
Q |
| |
|
||||| ||| | |||||||||||||||||| ||| |||||||||||| | || || |||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
11532309 |
ttgtttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggta |
11532210 |
T |
|
| Q |
311 |
cctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttc |
410 |
Q |
| |
|
|||||| ||||||| |||||| | | | | ||||| |||||||||||||||| |||||||||| ||||||||| |||| |||||||||| ||| || |
|
|
| T |
11532209 |
cctcaatagccactttcttttcttctagtactcttgagaacaaacattggtcaattaaataaggcaatgtcacaagagcatgcccaaaatgaagcttctc |
11532110 |
T |
|
| Q |
411 |
aat |
413 |
Q |
| |
|
||| |
|
|
| T |
11532109 |
aat |
11532107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 119 - 413
Target Start/End: Complemental strand, 29955088 - 29954794
Alignment:
| Q |
119 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
218 |
Q |
| |
|
|||| |||||||| | |||||||||||| | || | ||| |||| |||||||| ||||||||||||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
29955088 |
gaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccatatctttggcattattcc- |
29954990 |
T |
|
| Q |
219 |
gaaac-tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaac |
317 |
Q |
| |
|
|| || ||||||||||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
29954989 |
gatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctcactccttggtacctcaat |
29954890 |
T |
|
| Q |
318 |
agccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttcaat |
413 |
Q |
| |
|
||||| |||||| | | ||| ||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
29954889 |
tgccaccttcttttcttctagtgctcttgaaaacaaacattggtcaggtaaataaggcaatgtcacaaggacatgcccaaaatgaagcttctcaat |
29954794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 403
Target Start/End: Original strand, 51369360 - 51369649
Alignment:
| Q |
114 |
ggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattg |
213 |
Q |
| |
|
|||| |||| |||| ||| | ||||||||| || || || | ||| ||||||||||||| ||||||||||||||||| || |||| ||||| ||||| |
|
|
| T |
51369360 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcattt |
51369459 |
T |
|
| Q |
214 |
ttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacct |
313 |
Q |
| |
|
|||||| | | || |||||||||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
51369460 |
ttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtactt |
51369559 |
T |
|
| Q |
314 |
caacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaa |
403 |
Q |
| |
|
||||||||||| |||||| | | | |||| | ||||||| |||||||| | |||||||| ||| ||||| ||||| |||| ||||| |
|
|
| T |
51369560 |
caacagccactttcttttcttctagtaatcttgcatacaaacactggtcaagtatataaggcaatgtgacaagaacatgcccaagatgaa |
51369649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 160 - 423
Target Start/End: Complemental strand, 14623128 - 14622865
Alignment:
| Q |
160 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
259 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14623029 |
T |
|
| Q |
260 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
359 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
|
|
| T |
14623028 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14622929 |
T |
|
| Q |
360 |
gtcaagcaaataaggcagtgtcacaaggacatggccaaaatgaaccttttcaataacagaactg |
423 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||| |||| ||||| | ||||||| || |||||| |
|
|
| T |
14622928 |
gtcaagtaaataaggcaatgtcacaagaacatgcccaagatgaagcatttcaatgactgaactg |
14622865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 119 - 401
Target Start/End: Complemental strand, 12847066 - 12846784
Alignment:
| Q |
119 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
218 |
Q |
| |
|
||||||||||||| | |||||||||||| || || ||||| |||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
12847066 |
gaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcct |
12846967 |
T |
|
| Q |
219 |
gaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaaca |
318 |
Q |
| |
|
| || || ||||||| |||||| ||||| |||||||||| | || ||| ||||||||||||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
12846966 |
gtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttcttggaacctcaatg |
12846867 |
T |
|
| Q |
319 |
gccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaaggacatggccaaaatg |
401 |
Q |
| |
|
|||||| |||||| | | | | ||||||||||||||||| || ||||||||||||| ||| ||||| ||||| |||||||| |
|
|
| T |
12846866 |
gccactttcttttcagctagttctcttgaaaacaaacattgatctagcaaataaggcaatgtaacaagaacatgtccaaaatg |
12846784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 160 - 397
Target Start/End: Complemental strand, 14589470 - 14589233
Alignment:
| Q |
160 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
259 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14589371 |
T |
|
| Q |
260 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
359 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
|
|
| T |
14589370 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14589271 |
T |
|
| Q |
360 |
gtcaagcaaataaggcagtgtcacaaggacatggccaa |
397 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||| |||| |
|
|
| T |
14589270 |
gtcaagtaaataaggcaatgtcacaagaacatgcccaa |
14589233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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