View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14380_high_7 (Length: 269)

Name: NF14380_high_7
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14380_high_7
NF14380_high_7
[»] chr5 (24 HSPs)
chr5 (75-254)||(23089252-23089426)
chr5 (51-209)||(34769541-34769694)
chr5 (51-208)||(39060169-39060321)
chr5 (115-198)||(4925098-4925181)
chr5 (47-157)||(35211935-35212040)
chr5 (51-176)||(34383704-34383826)
chr5 (114-177)||(9959321-9959384)
chr5 (110-181)||(14593891-14593962)
chr5 (50-111)||(4924778-4924839)
chr5 (47-156)||(35205119-35205223)
chr5 (50-206)||(10523803-10523954)
chr5 (150-208)||(35205244-35205302)
chr5 (150-208)||(35211849-35211907)
chr5 (51-116)||(37902445-37902510)
chr5 (135-207)||(7011792-7011864)
chr5 (52-116)||(14947657-14947721)
chr5 (123-195)||(35470311-35470383)
chr5 (50-116)||(38698223-38698289)
chr5 (137-200)||(10923726-10923789)
chr5 (134-197)||(29812029-29812092)
chr5 (152-199)||(38744668-38744715)
chr5 (157-199)||(16328083-16328125)
chr5 (123-181)||(38697903-38697961)
chr5 (118-175)||(2907804-2907861)
[»] chr4 (23 HSPs)
chr4 (50-249)||(55875774-55875968)
chr4 (50-208)||(779866-780019)
chr4 (50-208)||(23559986-23560139)
chr4 (50-208)||(48262961-48263118)
chr4 (51-199)||(5415149-5415292)
chr4 (50-207)||(30052344-30052497)
chr4 (51-209)||(52326981-52327134)
chr4 (110-228)||(17476163-17476281)
chr4 (51-209)||(41377354-41377507)
chr4 (110-199)||(38567949-38568038)
chr4 (76-191)||(7907397-7907504)
chr4 (51-209)||(55875969-55876122)
chr4 (51-208)||(46381990-46382142)
chr4 (114-178)||(9268362-9268426)
chr4 (114-178)||(2681110-2681174)
chr4 (114-181)||(2714253-2714320)
chr4 (50-189)||(19485772-19485909)
chr4 (110-193)||(43354991-43355073)
chr4 (144-198)||(4974603-4974657)
chr4 (113-181)||(34388830-34388898)
chr4 (114-198)||(206248-206334)
chr4 (125-187)||(37556280-37556342)
chr4 (52-113)||(30091115-30091176)
[»] chr1 (19 HSPs)
chr1 (51-208)||(23570980-23571132)
chr1 (50-208)||(7900127-7900280)
chr1 (50-209)||(43496369-43496523)
chr1 (51-254)||(47394342-47394541)
chr1 (50-198)||(19993359-19993502)
chr1 (50-208)||(37457595-37457748)
chr1 (110-198)||(19322803-19322891)
chr1 (82-209)||(51613258-51613379)
chr1 (113-209)||(50428450-50428546)
chr1 (51-198)||(1035717-1035859)
chr1 (59-198)||(7167980-7168114)
chr1 (114-209)||(26707097-26707191)
chr1 (110-199)||(16679936-16680025)
chr1 (50-206)||(29058575-29058728)
chr1 (114-178)||(46823635-46823699)
chr1 (50-193)||(10574351-10574489)
chr1 (137-199)||(27641572-27641634)
chr1 (115-198)||(8848121-8848203)
chr1 (75-111)||(7386315-7386351)
[»] chr3 (21 HSPs)
chr3 (54-254)||(36177141-36177336)
chr3 (50-205)||(15877729-15877879)
chr3 (50-208)||(52313855-52314008)
chr3 (51-208)||(53464266-53464418)
chr3 (70-203)||(1995568-1995696)
chr3 (82-208)||(35424136-35424257)
chr3 (51-196)||(29096080-29096221)
chr3 (59-209)||(35496088-35496233)
chr3 (51-209)||(49644336-49644489)
chr3 (110-208)||(11467227-11467325)
chr3 (110-209)||(28939700-28939799)
chr3 (136-209)||(7352092-7352165)
chr3 (82-199)||(49786946-49787058)
chr3 (50-116)||(7352598-7352664)
chr3 (58-199)||(4489829-4489965)
chr3 (113-205)||(14898436-14898528)
chr3 (114-181)||(35846187-35846253)
chr3 (114-181)||(40793203-40793270)
chr3 (130-189)||(33104007-33104066)
chr3 (111-209)||(28999386-28999484)
chr3 (130-202)||(20207068-20207140)
[»] scaffold0015 (1 HSPs)
scaffold0015 (51-208)||(56561-56713)
[»] chr8 (14 HSPs)
chr8 (52-208)||(40278938-40279089)
chr8 (50-209)||(18226972-18227126)
chr8 (53-204)||(11425461-11425606)
chr8 (50-208)||(37479165-37479318)
chr8 (50-198)||(1156256-1156399)
chr8 (50-209)||(35158844-35158998)
chr8 (113-198)||(45251487-45251571)
chr8 (114-178)||(9682363-9682427)
chr8 (114-178)||(17312855-17312919)
chr8 (114-181)||(27594267-27594334)
chr8 (117-209)||(5191319-5191411)
chr8 (116-170)||(34954327-34954380)
chr8 (114-208)||(30234973-30235067)
chr8 (113-178)||(40713778-40713843)
[»] chr7 (22 HSPs)
chr7 (51-199)||(44396370-44396513)
chr7 (50-198)||(48252871-48253014)
chr7 (50-243)||(43692488-43692677)
chr7 (50-207)||(38346377-38346530)
chr7 (50-196)||(49081222-49081363)
chr7 (110-208)||(43598799-43598897)
chr7 (52-209)||(36725763-36725915)
chr7 (51-206)||(49080738-49080887)
chr7 (114-181)||(8404777-8404844)
chr7 (110-198)||(29681435-29681523)
chr7 (58-208)||(32485437-32485573)
chr7 (110-194)||(8099649-8099733)
chr7 (110-217)||(38994815-38994922)
chr7 (115-181)||(23869939-23870005)
chr7 (136-207)||(36118086-36118156)
chr7 (110-209)||(40160314-40160413)
chr7 (140-199)||(42691362-42691421)
chr7 (51-117)||(23772821-23772886)
chr7 (134-175)||(22790483-22790524)
chr7 (114-178)||(12879285-12879349)
chr7 (110-146)||(41159392-41159428)
chr7 (150-206)||(41159463-41159519)
[»] chr6 (8 HSPs)
chr6 (50-209)||(10682481-10682634)
chr6 (69-196)||(2844121-2844243)
chr6 (77-181)||(19763539-19763638)
chr6 (129-209)||(6313993-6314070)
chr6 (60-156)||(30775332-30775423)
chr6 (82-117)||(13685398-13685433)
chr6 (110-224)||(30349203-30349317)
chr6 (110-206)||(34427053-34427149)
[»] chr2 (24 HSPs)
chr2 (50-189)||(39375700-39375834)
chr2 (52-198)||(6858965-6859106)
chr2 (110-209)||(8322144-8322243)
chr2 (51-209)||(32914431-32914584)
chr2 (50-208)||(33386645-33386793)
chr2 (50-199)||(14657494-14657637)
chr2 (51-207)||(37069875-37070027)
chr2 (50-199)||(9104542-9104686)
chr2 (51-175)||(3739492-3739611)
chr2 (49-207)||(38609893-38610045)
chr2 (50-169)||(43490502-43490617)
chr2 (51-117)||(37258127-37258193)
chr2 (53-196)||(3739849-3739987)
chr2 (110-181)||(40095791-40095862)
chr2 (104-170)||(4897252-4897318)
chr2 (104-170)||(4944646-4944712)
chr2 (152-206)||(13250507-13250561)
chr2 (130-209)||(3384726-3384805)
chr2 (50-148)||(7395458-7395551)
chr2 (110-207)||(5147130-5147226)
chr2 (134-181)||(18565740-18565787)
chr2 (155-207)||(7394958-7395010)
chr2 (50-117)||(29794402-29794469)
chr2 (135-209)||(29984935-29985009)
[»] scaffold0110 (2 HSPs)
scaffold0110 (50-207)||(13772-13925)
scaffold0110 (50-207)||(21509-21662)
[»] scaffold0867 (1 HSPs)
scaffold0867 (50-116)||(3562-3628)
[»] scaffold0032 (1 HSPs)
scaffold0032 (115-212)||(37923-38020)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 23089426 - 23089252
Alignment:
Q  75 atatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccat 174  Q
    ||||||||||||||||||| ||||| |||||||||||||||||     ||||||||||||||||||||||| || ||| | ||||||||||||||| |||    
T  23089426 atatggatggtataaatggatcccatataatatattatattat-----ttcacattttccaattatttaaatcactcatccacattttttaaatattcat 23089332  T
Q  175 accactcctctaaaactctaaaatgagtcccactatatctacaataatcaatcataatgtgagaaatatttgttatttgt 254  Q
    ||||||| ||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||| | ||||||||||    
T  23089331 accactcatctaaaactttaaaatgagtcccactaaattcacaataaccaatcataatgtgagaaatgtgtgttatttgt 23089252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 34769694 - 34769541
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    ||||||||||||||||| ||| |||| ||| ||||||||| ||||||||||||||| |||||||||     | ||||| || ||||||||||||||||||    
T  34769694 agagcatccacatccatgccatccatttgggtggtataaacgggtcccacataatacattatatta-----cctcacacttcccaattatttaaaccatt 34769600  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||||||||||||||||||| | |   ||||||||||||| |||||||||    
T  34769599 caactacattttttaaatatccataccacccattataaactctaaaatgggtcccacta 34769541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 39060169 - 39060321
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| |||||| |||| |||| |||||| |||||||||||||||||||||||     || |||||||||||||||| ||| | ||||||||||||| |    
T  39060169 agagcacccacatacatatcacctatatgggtggtataaatgggtcccacataa-----tacattatattacttcacacttttcgattatttaaaccact 39060263  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||||| ||||| |||||||||||| ||||||||||||||| ||||||  ||||||||    
T  39060264 caactatattttctaaatatccatatcactcctctaaaactttaaaataggtcccact 39060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 4925098 - 4925181
Alignment:
Q  115 tatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||    
T  4925098 tatattacttcacacttttcaattatttaaaccactcaactacattttttaaatatccatatcactcttccaaaactctaaaat 4925181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 35212040 - 35211935
Alignment:
Q  47 atatagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaac 146  Q
    ||||||||||||||||| ||| ||||||| || | ||||||||||||||||||||||     |||||||||||||||| ||| || ||| ||||||||||    
T  35212040 atatagagcatccacattcatgccacccaaataggtggtataaatgggtcccacata-----ttatattatattactttacacttcccagttatttaaac 35211946  T
Q  147 cattcaactac 157  Q
    || ||||||||    
T  35211945 cactcaactac 35211935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 34383826 - 34383704
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| |||||||||| ||| ||| ||||||||||||||| ||  |||||||||||||   |||||||||||| ||| ||  |||||||||||||||      
T  34383826 agagcaaccacatccatgccatccaaatggatggtataaataggatccacataatatat---attatattactttacacttctcaattatttaaaccaca 34383730  T
Q  151 caactacattttttaaatatccatac 176  Q
     ||||||||||| |||||||| ||||    
T  34383729 aaactacattttctaaatatctatac 34383704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 9959384 - 9959321
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacc 177  Q
    ||||| ||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  9959384 ttatactacttcacactttccaattatttaaactactcaactacattttctaaatatccatacc 9959321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 14593891 - 14593962
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||||||||||||||  |  |||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  14593891 tatattatattacttcacaaatctcaattatttaaaccattcaattacattttataaatattcataccactc 14593962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 4924778 - 4924839
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatatta 111  Q
    ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||    
T  4924778 tagagcaaccacatccatgccacccatatgggtggtataaatgagtcccacataatacatta 4924839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 35205119 - 35205223
Alignment:
Q  47 atatagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaac 146  Q
    |||||||||| ||| |||||| ||||||| || | ||||||||||||||||||||||     |||||||||||||||| ||| || ||| ||||||||||    
T  35205119 atatagagcacccaaatccatgccacccaaataggtggtataaatgggtcccacata-----ttatattatattactttacacttcccagttatttaaac 35205213  T
Q  147 cattcaacta 156  Q
     | |||||||    
T  35205214 aactcaacta 35205223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 10523803 - 10523954
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| ||||||||||  ||||||||| | ||||||||||||  |||||  |||| |||||||||| ||||   || ||||  ||||||||||||||     
T  10523803 tagagcacccacatccatgtcacccatattggtggtataaatggaccccactcaatacattatattattttac---acttttt--aattatttaaaccac 10523897  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtccca 206  Q
    |||  |||||||| ||||||| ||||||||   ||||||| | |||| |||||||||    
T  10523898 tcacttacattttctaaatattcataccaccgatctaaaattttaaattgagtccca 10523954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 35205244 - 35205302
Alignment:
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||||||||  |||||||    
T  35205244 tcaattacattttctaaatatccataccactcccctaaaactctaaaatggctcccact 35205302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 35211907 - 35211849
Alignment:
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||||||||  |||||||    
T  35211907 tcaattacattttctaaatatccataccactcccctaaaactctaaaatggctcccact 35211849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 37902510 - 37902445
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatatta 116  Q
    |||||| |||||||||| |||||||||| | ||||||||||| | ||||||| |||||||||||||    
T  37902510 agagcaaccacatccatgccacccatattggtggtataaatgagacccacattatatattatatta 37902445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 7011792 - 7011864
Alignment:
Q  135 aattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    ||||||||||| ||  ||||||||||||| |||||| |||| ||||  |||||||||||||| ||||||||||    
T  7011792 aattatttaaagcagccaactacatttttcaaatattcatatcacttatctaaaactctaaattgagtcccac 7011864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 14947657 - 14947721
Alignment:
Q  52 gagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatatta 116  Q
    ||||| ||||||||||  || |||||| |||||||||||||| ||||||||||||| ||||||||    
T  14947657 gagcacccacatccatgtcatccatatagatggtataaatggatcccacataatattttatatta 14947721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 35470383 - 35470311
Alignment:
Q  123 ttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaa 195  Q
    |||||||||| ||||||||||||| | ||||||| ||||| ||||||| ||||| |||| ||||||| |||||    
T  35470383 ttcacatttttcaattatttaaactactcaactatattttctaaatattcatactactcgtctaaaattctaa 35470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 38698289 - 38698223
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatatta 116  Q
    |||||||||||||||||||| || ||||||  |||||||||||| ||||||  |||| |||||||||    
T  38698289 tagagcatccacatccatactactcatatgagtggtataaatggatcccactgaatacattatatta 38698223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 10923789 - 10923726
Alignment:
Q  137 ttatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatga 200  Q
    ||||| |||||| ||||||| ||||| | ||||| |||||||||||||||||| | ||||||||    
T  10923789 ttattcaaaccactcaactatattttcttaatattcataccactcctctaaaattttaaaatga 10923726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 29812029 - 29812092
Alignment:
Q  134 caattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaa 197  Q
    ||||||||||||| |||||| ||  |||||||||||| |||| || || |||||||||||||||    
T  29812029 caattatttaaacaattcaattaatttttttaaatattcatatcattcatctaaaactctaaaa 29812092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 38744668 - 38744715
Alignment:
Q  152 aactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    ||||| ||||||||||||| |||||||||| ||||||||| |||||||    
T  38744668 aactatattttttaaatattcataccactcatctaaaactttaaaatg 38744715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 16328083 - 16328125
Alignment:
Q  157 cattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||    
T  16328083 cattttttaaatatccataccacttctccaaaactcaaaaatg 16328125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 38697961 - 38697903
Alignment:
Q  123 ttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||| || || ||||||||||||  ||||||| ||||||||||||||||||| ||||    
T  38697961 ttcacacttccctattatttaaacctctcaactaaattttttaaatatccatactactc 38697903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 2907804 - 2907861
Alignment:
Q  118 attacttcacattttccaattatttaaaccattcaactacattttttaaatatccata 175  Q
    |||||||||||||| | |||||||||||| | |||||| ||||||| |||||| ||||    
T  2907804 attacttcacatttcctaattatttaaacaactcaacttcatttttaaaatattcata 2907861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 50 - 249
Target Start/End: Complemental strand, 55875968 - 55875774
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||||||||||||||||||||||| ||  | |||||||||||||||||||||     || ||||||||||||||||| |  |||||| ||||||||     
T  55875968 tagagcatccacatccataccacccatgtgtgtagtataaatgggtcccacataa-----taaattatattacttcacatctctcaattacttaaaccac 55875874  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccactatatctacaataatcaatcataatgtgagaaatatttgtta 249  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| ||||  |||||||||||||||| || ||| |||||    
T  55875873 tcaactacattttttaaatattcataccactcatctaaaactctaaaatgggtcccactaaatccacaaccatcaatcataatgtgacaagtatgtgtta 55875774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 779866 - 780019
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||     || |||||||||||||||||||| | |||||||||||||     
T  779866 tagagcacccacatccataccacccatatgggtggtataaatgggtctcacataa-----tacattatattacttcacatttttccattatttaaaccac 779960  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||||||| ||||||||    
T  779961 tcaactatattttctaaatatccataccactcctccaaaattctaaaatgggtcccact 780019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 23559986 - 23560139
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| |||||||||| ||||||| |||| ||||||||||||| |||||||||||||||| ||||     ||| ||| |||||||||||||||||||     
T  23559986 tagagcacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattacatta-----ctttacactttccaattatttaaaccac 23560080  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  23560081 tcaactacattttctaaatatccatgccactcctctaaaactctaaaatgggtcccact 23560139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 48262961 - 48263118
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaacca- 148  Q
    |||||||||||||||||| ||||||| |||||||||||||||| | | ||||||||||||||||   |||||||| ||| ||| |||||||||||| ||     
T  48262961 tagagcatccacatccatgccacccaaatggatggtataaatgagactcacataatatattata--ctattactttacacttttcaattatttaaatcat 48263058  T
Q  149 ttcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    || ||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||    
T  48263059 tttaactacattttctaaatattcataccactcctctaaaactctaaaatgggtctcact 48263118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 5415149 - 5415292
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||  ||||||||||||     ||||||||||| ||| || ||||||||||||  || |    
T  5415149 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatata-----ttatattactttacacttcccaattatttaactcact 5415243  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  5415244 caactacattttctaaatattcataccactcctctaaaactctaaaatg 5415292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 30052497 - 30052344
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||||||||||||||| || ||| |||||||| |  |||||| ||||| | |    ||||||||||| |||||  ||||||||||||||     
T  30052497 tagagcatccacatccataccacccacattgatagtataaatagaccccacacaatatttaa----atattacttcatattttttaattatttaaaccaa 30052402  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  30052401 tcaactacattttttaaatatccatactactcatctaaaactctaaattgagtcccac 30052344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 52327134 - 52326981
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| |||||||||| |||||||||||  | |||||||||||||||||||||     ||| ||||||||||||||| ||| |||||||||||| || |    
T  52327134 agagcagccacatccatgccacccatatgagtagtataaatgggtcccacataa-----tattttatattacttcacacttttcaattatttaaatcact 52327040  T
Q  151 caactacattttt-taaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||||  |||||||||    
T  52327039 caactacatttttctaaatatccataccact-ctccaaaactctaaaataggtcccacta 52326981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 17476281 - 17476163
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||| |||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||| || |||| | |||||||  ||||||||    
T  17476281 tatattatatttcttcacattttccaattatttagacaactcaactacattttctaaatatccataccactcatccaaaattttaaaatggatcccacta 17476182  T
Q  210 tatctacaataatcaatca 228  Q
      | |||||||||||||||    
T  17476181 attttacaataatcaatca 17476163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 41377507 - 41377354
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    ||||||||||| |||||  |||| |||||||| |||||||||||||  ||||||||||||||||||     |||| || ||  ||||||||| ||| | |    
T  41377507 agagcatccacttccatgtcacctatatggatagtataaatgggtcttacataatatattatatta-----cttcccacttctcaattattttaactact 41377413  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||||||||||||||| ||||| |||| | ||||||||| ||||| |||||||||    
T  41377412 caactacattttttaaatattcatactactcttttaaaactcttaaatgggtcccacta 41377354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 38568038 - 38567949
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    ||||||||||||||||  | ||| ||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||| |||||||    
T  38568038 tatattatattacttcttacttttcaattatttaaaccactcaactacattttttaaatattcataccactattctaaaactttaaaatg 38567949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 7907504 - 7907397
Alignment:
Q  76 tatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccata 175  Q
    ||||| |||||||||||||||||||||||||  |||||        ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  7907504 tatgggtggtataaatgggtcccacataatactttata--------cttcacactttccaattatttaaaccactcaactacattttctaaatatccata 7907413  T
Q  176 ccactcctctaaaact 191  Q
     ||||| || ||||||    
T  7907412 tcactcttccaaaact 7907397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 55875969 - 55876122
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    ||||||||||||||||||| ||| || | | ||||||||||||  || || |||     ||||||||||||||||||| ||  ||||||||||||| |||    
T  55875969 agagcatccacatccatactacctattttggtggtataaatggaccctacttaa-----tatattatattacttcacacttctcaattatttaaactatt 55876063  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||| ||| |||||||||||||| |||  | ||||||||| |||  |||||||||    
T  55876064 caactacactttctaaatatccatacccctcacccaaaactctacaattggtcccacta 55876122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 46382142 - 46381990
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    ||||||||||||||||| |||||||  | | ||||||||||||  || || |||||||||||||||      |||||| ||  ||||||||||||||| |    
T  46382142 agagcatccacatccatgccacccaatttggtggtataaatggaccctacttaatatattatattag-----ttcacacttctcaattatttaaaccact 46382048  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    | |||| |||||| |||||| |||||||||  ||||||||| ||||||| ||||||||    
T  46382047 ccactatatttttcaaatattcataccacttatctaaaactttaaaatgggtcccact 46381990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 9268362 - 9268426
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacca 178  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||| ||||||||||    
T  9268362 ttatattacttcacacttttcaattatttaaaccactcaactacattttctaaacatccatacca 9268426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 2681174 - 2681110
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacca 178  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||| || |||| ||||||||||    
T  2681174 ttatattacttcacacttttcaattatttaaaccactcaactacatcttctaaacatccatacca 2681110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 2714253 - 2714320
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||| |||| | |||||||||||||||| |||| ||||| |||||||||||||| |||||||||    
T  2714253 ttatattatttcatactttccaattatttaaatcatttaactatattttttaaatatcgataccactc 2714320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 19485909 - 19485772
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| ||||||||||  || |||||||| ||||||||||||   |||| || | || || ||||||||| || ||| |||  |||||||||||||||    
T  19485909 tagagcacccacatccatgtcatccatatgggtggtataaatggactccac-tact-taatacattatattattttacactttttaattatttaaaccat 19485812  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaa 189  Q
    |||  |||||||| ||||||| | |||||||| |||||||    
T  19485811 tcacttacattttctaaatattcgtaccactcatctaaaa 19485772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 43354991 - 43355073
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactct 193  Q
    ||||||||||||||| |||  ||| |||||||||||||| |||| |||||||||||||||| |||| ||||  | |||||||||    
T  43354991 tatattatattactttacaccttc-aattatttaaaccactcaattacattttttaaatattcatatcacttttttaaaactct 43355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 4974657 - 4974603
Alignment:
Q  144 aaccattcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||| |||||||||||||    
T  4974657 aaccactcaactatattttctaaatattcataccactcctcaaaaactctaaaat 4974603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 34388830 - 34388898
Alignment:
Q  113 attatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    ||||||||| || ||||||| ||||||||||||||| | ||| ||||||| ||||||| |||| |||||    
T  34388830 attatattattttacatttttcaattatttaaaccactaaaccacattttctaaatattcatatcactc 34388898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 206334 - 206248
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacatt--ttttaaatatccataccactcctctaaaactctaaaat 198  Q
    |||||||| |||| ||||| ||||||||||||| ||||||||| |||  ||||||||||| ||| ||||   |||||||||| ||||    
T  206334 ttatattatttcatatttttcaattatttaaacaattcaactatatttcttttaaatatctataacacttagctaaaactcttaaat 206248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 37556280 - 37556342
Alignment:
Q  125 cacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaa 187  Q
    |||||||  ||||||||||||| | ||||||| |||||| |||||||||||| |||| |||||    
T  37556280 cacatttctcaattatttaaactactcaactatatttttaaaatatccatactactcatctaa 37556342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 30091176 - 30091115
Alignment:
Q  52 gagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattata 113  Q
    |||||||||||| ||||| || ||||||  || ||||||||| ||| |||||||||||||||    
T  30091176 gagcatccacatacatactactcatatgagtgatataaatggatcctacataatatattata 30091115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 23571132 - 23570980
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| || |||||||||||||||||||| |||||||||||||||||||||||     || |||||||||||||||||||| | ||||||||||| | |    
T  23571132 agagcacccgcatccataccacccatatgggtggtataaatgggtcccacataa-----tacattatattacttcacatttttccattatttaaacaact 23571038  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23571037 caactatattttttaaatatccataccactcctccaaaactctaaaatgagtcccact 23570980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 7900127 - 7900280
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| |||||||||| ||||| | |||||| ||||||||||| |||||||||||||     ||||||||||| | | || ||||||||||||||||     
T  7900127 tagagcacccacatccatgccacctaaatggatcgtataaatgggacccacataatata-----ttatattactttatacttcccaattatttaaaccac 7900221  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  7900222 tcaactacattttctaaatatccataccactcctctaaaactctaaaatgggtcccact 7900280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 43496369 - 43496523
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||     | ||||| ||  ||||||||||||| ||    
T  43496369 tagagcatccacatccatgccacccatttggatggtataaacgggtcccacataatacattatatta-----cctcacacttctcaattatttaaactat 43496463  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||||||||||||||||||||||||| | |   ||||||||||||| |||||||||    
T  43496464 tcaactacattttttaaatatccataccacccattataaactctaaaatgggtcccacta 43496523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 254
Target Start/End: Original strand, 47394342 - 47394541
Alignment:
Q  51 agagcatccacatccataccac--ccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaacca 148  Q
    ||||||||||||||||||||||  |||| ||  | |||||||||||| ||||||||     || |||||||||||||||| || |||||||||||||| |    
T  47394342 agagcatccacatccataccacacccatttgagtagtataaatgggttccacataa-----tacattatattacttcacacttcccaattatttaaacta 47394436  T
Q  149 ttcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccactatatctacaataatcaatcataatgtgagaaatatttgtt 248  Q
     ||  ||||||||||||||||| |||||||||| ||||||| ||||||||| || ||| || ||| || |||| |||||||||||||| |||||| | ||    
T  47394437 ctcgtctacattttttaaatattcataccactcttctaaaagtctaaaatgggt-ccattaaatccacgataaccaatcataatgtgacaaatatgtctt 47394535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 19993502 - 19993359
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||||||| | || || |||| ||||||| |||||  ||||||||||||||||||||     ||| ||| |||  ||||||||||||||     
T  19993502 tagagcatccacatccatgcaactcaaatgggtggtatagatgggatccacataatatattatatta-----ctttacactttttaattatttaaaccac 19993408  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  19993407 tcaactatattttctaaatatccataccactcctctaaaactctaaaat 19993359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 37457595 - 37457748
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||| | ||||||||     |||||| ||  |||||||| ||||||     
T  37457595 tagagcatccacatccacaccacccatataggtggtataaatgggtcccacgtaatacaatatattat-----ttcacacttctcaattattaaaaccac 37457689  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||| ||||| ||||||| |||||||||| || |||||| ||||||  ||||||||    
T  37457690 tcaactatattttctaaatatacataccactcttccaaaactttaaaataggtcccact 37457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 19322891 - 19322803
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    |||||||||||||| || | ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  19322891 tatattatattactacatacttctcaattatttaaaccattcaactacattttttaaatatccataccacttctccaaaactctaaaat 19322803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 51613258 - 51613379
Alignment:
Q  82 tggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||||||| ||||||||||||    || ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||  ||||||||||    
T  51613258 tggtataaatggatcccacataata----at-ttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcataccactc 51613352  T
Q  182 ctctaaaactctaaaatgagtcccacta 209  Q
     || |||||| ||||||| |||||||||    
T  51613353 ttccaaaact-taaaatgggtcccacta 51613379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 50428546 - 50428450
Alignment:
Q  113 attatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||||||||||| ||  |||||||||||| || ||||||| ||||| ||||||||||||||||||||| ||||||||||| || |||||||||    
T  50428546 attatattacttcacacttctcaattatttaaatcactcaactatattttctaaatatccataccactcctccaaaactctaaagtgggtcccacta 50428450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 1035717 - 1035859
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||  ||||| | ||||||||     |||||| ||  ||||||||||||||| |    
T  1035717 agagcatccacatccataccactcatatgggtggtatatatgggtcccatgtaatacaatatattat-----ttcacacttctcaattatttaaaccact 1035811  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
     ||||| ||||| ||||||| |||||||||| || |||||| ||||||    
T  1035812 aaactatattttctaaatatacataccactcttccaaaactttaaaat 1035859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 7168114 - 7167980
Alignment:
Q  59 cacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactaca 158  Q
    |||||||||  ||||||||||  | ||||||||||||| |||||||||| ||||||||     ||| |||||||||||||||||||||||  ||||||||    
T  7168114 cacatccatgtcacccatatgagtagtataaatgggtctcacataatattttatatta-----ctttacattttccaattatttaaaccacccaactaca 7168020  T
Q  159 ttttt-taaatatccataccactcctctaaaactctaaaat 198  Q
    ||||| |||||||||| || ||| ||| |||||||||||||    
T  7168019 tttttctaaatatccacacgact-ctccaaaactctaaaat 7167980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 26707191 - 26707097
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |  |||||| || ||||||||||||||    
T  26707191 ttatattagttcacacttttcaattatttaaaccattcaactacattttctaaatattcataccactcttacaaaact-tacaatgagtcccacta 26707097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 16679936 - 16680025
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    ||||||||||||||||||| ||  ||||||||| |||||||||| ||||||||| |||||| |||||||||| |  ||||||||||||||    
T  16679936 tatattatattacttcacacttctcaattattttaaccattcaattacatttttcaaatatacataccactcattcaaaactctaaaatg 16680025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 29058728 - 29058575
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||||||| |||   || ||||||||||||| || ||  ||||||||||| ||||   ||||||| |  |||| |||||||||||| ||     
T  29058728 tagagcatccacatccatgccatttatttggatggtataaacggatcttacataatatataatat---attactttattttttacaattatttaaatcac 29058632  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtccca 206  Q
    ||||  ||||| ||||||||| |||||||||| ||||||| | ||||||| ||||||    
T  29058631 tcaatcacattctttaaatattcataccactcttctaaaattttaaaatgggtccca 29058575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 46823699 - 46823635
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacca 178  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||| ||||||||||    
T  46823699 ttatattacttcacacttttcaattatttaaaccactcaactacattttctaaacatccatacca 46823635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 10574489 - 10574351
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||| ||||||||| ||||  ||||   ||||||||||| || |||||||||||| |||||||     ||||||||||  |||||||||||| ||     
T  10574489 tagagcattcacatccatgccactaatataagtggtataaatgagttccacataatataatatatta-----cttcacatttctcaattatttaaatcac 10574395  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactct 193  Q
    |||| || ||||||||||||| ||||| |||| ||||| |||||    
T  10574394 tcaattatattttttaaatattcatactactcatctaatactct 10574351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 27641572 - 27641634
Alignment:
Q  137 ttatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    ||||||||||||  |||||| |||||  ||||||||||||||||| ||||||||| |||||||    
T  27641572 ttatttaaaccacccaactaaattttccaaatatccataccactcatctaaaactttaaaatg 27641634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 8848203 - 8848121
Alignment:
Q  115 tatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    ||||||| |||||||||||||| ||||||||| | ||||||||| | || |||||||||||  || | || |||||||||||||    
T  8848203 tatattatttcacattttccaaatatttaaacaactcaactaca-tattaaaatatccatattacccatcaaaaactctaaaat 8848121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 7386315 - 7386351
Alignment:
Q  75 atatggatggtataaatgggtcccacataatatatta 111  Q
    |||||| |||||||||||| |||||||||||||||||    
T  7386315 atatgggtggtataaatggatcccacataatatatta 7386351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 54 - 254
Target Start/End: Complemental strand, 36177336 - 36177141
Alignment:
Q  54 gcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaa 153  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||||     || |||||||||||||||| ||||||||||||| ||||| |||     
T  36177336 gcatccacattcatgccacctatatggatggtataaatgggtcccacataa-----tagattatattacttcacactttccaattatttgaaccactcat 36177242  T
Q  154 ctacattttttaaatatccataccactcctctaaaactctaaaatgagtcccactatatctacaataatcaatcataatgtgagaaatatttgttatttg 253  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||  |||||||| ||  ||||||| |||||||||| | |||||| | |||||||||    
T  36177241 ctacattttttaaatattcataccactcatttaaaactctaaaatggatcccactaaattcacaataaccaatcataatatcagaaatgtgtgttatttg 36177142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 15877729 - 15877879
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||||||||||     || |||||||||||||||||||| | |||||||||||||     
T  15877729 tagagcacccccatccataccacccatatgggtggtataaatgggtcccacataa-----tacattatattacttcacatttttccattatttaaaccac 15877823  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtccc 205  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  15877824 tcaactatattttctaaatatccataccactcctccaaaactctaaaatgggtccc 15877879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 52313855 - 52314008
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| |||||||||| ||||||| |||| ||||||||||||| ||||||||     ||| |||||||||||| ||| |||| | ||||||||||||     
T  52313855 tagagcacccacatccatgccacccaaatgggtggtataaatgggacccacata-----ttacattatattactttacactttctagttatttaaaccac 52313949  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||    
T  52313950 tcaactacattttctaaatatccataccactcccctaaaactctaaaatgggtcccact 52314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 53464266 - 53464418
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| |||||||||| ||||||| |||| ||||||||||||| ||||||||     ||| |||||||||||| ||| |||| | |||||||||||| |    
T  53464266 agagcacccacatccatgccacccaaatgggtggtataaatgggacccacata-----ttacattatattactttacactttctagttatttaaaccact 53464360  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||    
T  53464361 caactacattttctaaatatccataccactcccctaaaactctaaaatgggtcccact 53464418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 1995568 - 1995696
Alignment:
Q  70 cacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaata 169  Q
    |||||||| ||||||||||||||||||||||||||     || |||||||||||||||| || |||||||||||||||| | ||||||||||| ||||||    
T  1995568 cacccatacggatggtataaatgggtcccacataa-----tacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaata 1995662  T
Q  170 tccataccactcctctaaaactctaaaatgagtc 203  Q
    |||||||||||||| ||||||||||||| |||||    
T  1995663 tccataccactcctttaaaactctaaaacgagtc 1995696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 35424136 - 35424257
Alignment:
Q  82 tggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    ||||||||||||||| |||||||     || |||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |    
T  35424136 tggtataaatgggtctcacataa-----tacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatatccataccaccc 35424230  T
Q  182 ctctaaaactctaaaatgagtcccact 208  Q
     ||||||||||||||||| ||| ||||    
T  35424231 ttctaaaactctaaaatgggtctcact 35424257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 29096080 - 29096221
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||||||||||||| | |||||| || ||||||||||||||  |||||| ||||||| |     |||||||||||||||| ||||||||||||||| |    
T  29096080 agagcatccacatccacatcacccacattgatggtataaatggaccccacacaatatataac----tattacttcacatttttcaattatttaaaccact 29096175  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaa 196  Q
    |||||||||| ||||||||| |||||||||| | ||||||||||||    
T  29096176 caactacattatttaaatattcataccactcatttaaaactctaaa 29096221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 209
Target Start/End: Original strand, 35496088 - 35496233
Alignment:
Q  59 cacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactaca 158  Q
    ||||||| | ||||| |||||  |||||||||||||||| ||||||||||     ||||||||||||||| ||  |||||||||||| ||||||||||||    
T  35496088 cacatccttgccacctatatgagtggtataaatgggtcctacataatata-----ttatattacttcacacttctcaattatttaaatcattcaactaca 35496182  T
Q  159 ttttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||| ||| ||||||| |||| ||||| |||||||||| ||||||||||    
T  35496183 tttttttaatttccatactactcttctaatactctaaaataagtcccacta 35496233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 49644489 - 49644336
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||| ||||||||  || |||||||||||| |||| |||||||  ||||| |||||||||||     ||||||||||| ||  ||||||||||||||| |    
T  49644489 agagtatccacatttattccacccatatgggtggtttaaatggaccccacttaatatattat-----attacttcacacttctcaattatttaaaccact 49644395  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||| |||||||||| |||||| || |||||||||||||| |||||||||    
T  49644394 caactacatttttcaaatatccatgccactcatccaaaactctaaaatgggtcccacta 49644336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 11467227 - 11467325
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||||||||||||||| ||  ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||| ||||    
T  11467227 tatattatattacttcacacttctcaattatttaaaccaatcaactacattttctaaatatccatatcactcctctaaaattctaaaatgggtctcact 11467325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 28939700 - 28939799
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||||||||| ||  ||||||||||||| | ||||||||||||| ||||||| |||| ||||| || ||||||||| |||  |||||||||    
T  28939700 tatattatattacttcacacttctcaattatttaaactactcaactacattttctaaatattcatatcactcatccaaaactctacaattggtcccacta 28939799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 7352165 - 7352092
Alignment:
Q  136 attatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | |   ||||||||||||| |||||||||    
T  7352165 attatttaaaccattcaactacattttttaaatattcataccacccattataaactctaaaatgggtcccacta 7352092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 49786946 - 49787058
Alignment:
Q  82 tggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    ||||||||||||| | || ||||||||||||||||| |  ||| |||| |  ||||||||||||||| ||||||| ||||| ||||||| ||||||||||    
T  49786946 tggtataaatgggactcatataatatattatattattt--ctt-acatct--caattatttaaaccactcaactatattttataaatattcataccactc 49787040  T
Q  182 ctctaaaactctaaaatg 199  Q
     ||||||||| |||||||    
T  49787041 atctaaaactttaaaatg 49787058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 7352664 - 7352598
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatatta 116  Q
    ||||||||||||||||||  ||||||| ||| ||||||||| ||||||||||||||| |||||||||    
T  7352664 tagagcatccacatccatgtcacccatttgggtggtataaacgggtcccacataatacattatatta 7352598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 4489965 - 4489829
Alignment:
Q  58 ccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactac 157  Q
    ||||||||||  |||  |||||||| ||||||||||| | || ||||||||||||||||| |||      || ||||||||||||| |||| |||| ||     
T  4489965 ccacatccatgtcacttatatggatagtataaatgggacacatataatatattatattattttat-----atattccaattatttataccactcaattat 4489871  T
Q  158 attttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    ||||| |||||||  ||||||||| | |||||||||||||||    
T  4489870 attttataaatatttataccactcatttaaaactctaaaatg 4489829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 14898528 - 14898436
Alignment:
Q  113 attatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtccc 205  Q
    ||||||||| || ||||||| ||||| ||||||||| | ||||||||||| ||||||| |||||||||  |  ||||||||||| ||||||||    
T  14898528 attatattattttacatttttcaattgtttaaaccactaaactacattttctaaatattcataccacttattcaaaactctaaattgagtccc 14898436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 35846187 - 35846253
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||| || ||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  35846187 ttatattattttacacttttcaattatttaaaccattcaactacattttctaaatatcc-taccactc 35846253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 40793203 - 40793270
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||||||| || ||| ||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  40793203 ttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatcactc 40793270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 33104066 - 33104007
Alignment:
Q  130 tttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaa 189  Q
    |||| |||||||||||| | |||||||||||||| ||||||||||||||||  |||||||    
T  33104066 tttctaattatttaaacaactcaactacatttttaaaatatccataccacttatctaaaa 33104007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 28999386 - 28999484
Alignment:
Q  111 atattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||| |||| ||||  ||||||||||||  ||| ||| ||||||| | ||||| || ||||  | || |||||||||||||||||| |||||    
T  28999386 atattatattatttcatatttctcaattatttaaaaaattgaaccacattttatgaatattcacaccatccatccaaaactctaaaatgagtctcacta 28999484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 20207068 - 20207140
Alignment:
Q  130 tttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagt 202  Q
    |||| |||||||||||| | ||||| ||||||| ||||||| ||||  |||| |  |||||||||||||||||    
T  20207068 tttctaattatttaaacaactcaaccacattttctaaatattcataaaactcattcaaaactctaaaatgagt 20207140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 56713 - 56561
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| |||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||     ||| ||| ||  ||||||||||||||| |    
T  56713 agagcaaccacatccatgccatccaaatggatggtataaatgggacccacataatatattatatta-----ctttacacttctcaattatttaaaccact 56619  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  56618 caactacattttctaaatatccataccactcctctaaaactctaatatgggtcccact 56561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 208
Target Start/End: Complemental strand, 40279089 - 40278938
Alignment:
Q  52 gagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattc 151  Q
    ||||| |||||| ||| ||||||| |||  ||||||||||||| |||||||||||||||||||||     ||| | | ||||||||||||||||||| ||    
T  40279089 gagcacccacattcatgccacccaaatgagtggtataaatgggacccacataatatattatatta-----ctttatactttccaattatttaaaccactc 40278995  T
Q  152 aactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||    
T  40278994 aactacattttctaaatatccataccactccactaaaactctaaaatgggtcccact 40278938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 18227126 - 18226972
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||||| |||||||||     | ||||| || |||||||||||||||||    
T  18227126 tagagcatccacatccatgccacccatttgggtggtataaacgggtcccacataatacattatatta-----cctcacacttcccaattatttaaaccat 18227032  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
     ||||||||||||||||||||||||||||| | |   |||||||||||||  ||||||||    
T  18227031 ccaactacattttttaaatatccataccacccattataaactctaaaatggatcccacta 18226972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 11425461 - 11425606
Alignment:
Q  53 agcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattca 152  Q
    |||| |||||||||| ||||||| ||||||||||||||||||  ||||||||||||     ||||||||||| ||| || |||||||||||| | | |||    
T  11425461 agcaaccacatccatgccacccaaatggatggtataaatgggatccacataatata-----ttatattactttacacttcccaattatttaaccgactca 11425555  T
Q  153 actacattttttaaatatccataccactcctctaaaactctaaaatgagtcc 204  Q
    |||||||||| ||||||| |||| ||||||||||||||||||||||| ||||    
T  11425556 actacattttctaaatattcata-cactcctctaaaactctaaaatgggtcc 11425606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 37479318 - 37479165
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||  ||| ||||||||||||||||||     ||| | | ||| |||||||||||||||     
T  37479318 tagagcaaccacatccatgccacttatatggatggtataaatgaatcc-acataatatattatatta-----ctttaaacttttcaattatttaaaccac 37479225  T
Q  150 tcaactacatt-ttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||| ||| |||||||    
T  37479224 tcaactacatttttttaaatatccatactactcatctaaaactctaaattgaatcccact 37479165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 1156399 - 1156256
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| | ||||||||     |||||| || ||||||||||||||||     
T  1156399 tagagcatccacatccataccacccatatgagtggtataaatgggtctcacgtaatacaatatattat-----ttcacacttcccaattatttaaaccac 1156305  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    | ||||| || || |||||||||||||||||| || |||| | ||||||    
T  1156304 taaactatatcttctaaatatccataccactcttccaaaattttaaaat 1156256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 35158844 - 35158998
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||| |||  || |||||||     ||||||||||  ||| || ||||||||||||||||     
T  35158844 tagagcatccacatccatatcactcatatgggtggtataaatgagtctgacttaatata-----ttatattactggacacttcccaattatttaaaccac 35158938  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||| ||||||| ||||||| |  ||  ||||||||||||  |||||||||    
T  35158939 tcaactacattttctaaatattcataccatttttcgtaaactctaaaataggtcccacta 35158998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 45251487 - 45251571
Alignment:
Q  113 attatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    ||||| ||| |||||||||| | ||||||||||||| | || |||||||||||||||||||||| ||| |||||||||||||||||    
T  45251487 attatgttatttcacatttttctattatttaaaccacttaaatacattttttaaatatccatactact-ctctaaaactctaaaat 45251571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 9682427 - 9682363
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacca 178  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||| ||||||||||    
T  9682427 ttatattacttcacacttttcaattatttaaaccactcaactacattttctaaacatccatacca 9682363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 17312919 - 17312855
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacca 178  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||| || |||||||||||||||    
T  17312919 ttatattacttcacacttttcaattatttaaaccactcaactacatcttctaaatatccatacca 17312855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 27594334 - 27594267
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||| ||||||  |||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  27594334 ttatattatttcacaccttccaattatttaaaccactcaactacattttctaaatattcataccactc 27594267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 5191411 - 5191319
Alignment:
Q  117 tattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||||||| ||| |||||| |||||| | |||| ||||||||| |||||| |||| ||||| || |||| |||||||||  ||||||||    
T  5191411 tattacttcacacttttcaattacttaaactactcaattacatttttcaaatattcatatcactcatccaaaattctaaaatggatcccacta 5191319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 34954327 - 34954380
Alignment:
Q  116 atattacttcacattttccaattatttaaaccattcaactacattttttaaatat 170  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||||||||||    
T  34954327 atattacttcatattttt-aattatttaaaccactcaactacattttttaaatat 34954380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 30234973 - 30235067
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||||||| || |||||| |||| ||||||||| | ||||||  |||||||||||||  |||| || | || |||||||||||||  ||||||||    
T  30234973 ttatattattttacatttcccaaatatttaaacaactcaactgtattttttaaatatttatacaacccatcaaaaactctaaaataggtcccact 30235067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 40713778 - 40713843
Alignment:
Q  113 attatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacca 178  Q
    ||||||||| |||||| |||  |||||||||||| | | ||| |||||||||||||||| ||||||    
T  40713778 attatattatttcacacttttaaattatttaaacaagtaaaccacattttttaaatatctatacca 40713843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 44396513 - 44396370
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||||     ||| ||| || |||||||||||| ||| |    
T  44396513 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatatta-----ctttacacttcccaattatttaacccact 44396419  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  44396418 caactacattttctaaatattcataccactcctctaaaactctaaaatg 44396370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 48253014 - 48252871
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| |||||||||| |||||||||||  | |||||||||||||||| ||||||| ||||||||     ||||||| |||||||||||||||||||     
T  48253014 tagagcacccacatccatgccacccatatgagtagtataaatgggtcccatataatattttatatta-----cttcacactttccaattatttaaaccac 48252920  T
Q  150 tcaactacattttt-taaatatccataccactcctctaaaactctaaaat 198  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  48252919 tcaactacatttttctaaatatccataccact-ctccaaaactctaaaat 48252871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 43692677 - 43692488
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||||||| || |||||||| ||| || ||||||||||| |||||||||||||| ||||||||||     |||||| ||  |||||||||||||||     
T  43692677 tagagcatccatattcataccactcatttgaatggtataaataggtcccacataatacattatattat-----ttcacacttctcaattatttaaaccac 43692583  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccactatatctacaat-aatcaatcataatgtgagaaatat 243  Q
    ||| ||| |||||||||||||  ||||||||| ||||||||| ||||||| |||||| || |   ||||| || |||||||||||||| ||||||    
T  43692582 tcatctaaattttttaaatatttataccactcttctaaaactttaaaatgggtcccattaaactcacaataaaccaatcataatgtgacaaatat 43692488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 38346377 - 38346530
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||||||||||||||| || ||| || ||||||||||||||  |||| ||||||||| |    ||||||||||| |||||  ||||||||||||||     
T  38346377 tagagcatccacatccatatcatccacattgatggtataaatggaccccatataatatataa----atattacttcatattttttaattatttaaaccac 38346472  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    |||||||||||||||||||||  |||| |||| ||||||||| |||| || |||||||    
T  38346473 tcaactacattttttaaatatttatacaactcatctaaaactttaaattgggtcccac 38346530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 49081363 - 49081222
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||     || | ||||| |||||||||||| |||    
T  49081363 tagagcatcagcatccataccacccatatagatggtataaatgggtctcatataatacattatattat-----tttatatttttcaattatttaaatcat 49081269  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaa 196  Q
    ||| ||||||||| |||||||  ||||||||| ||||||||| ||||    
T  49081268 tcatctacattttctaaatatttataccactcatctaaaactttaaa 49081222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 43598897 - 43598799
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||||||||||| |||||| ||  ||||||||||||||| ||||||| |||||| |||||| |||||||||| ||||||||| ||||||||||| ||||    
T  43598897 tatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcataccactcatctaaaactttaaaatgagtctcact 43598799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 36725915 - 36725763
Alignment:
Q  52 gagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattc 151  Q
    ||||||||||||||||||||| || |||| |||||||||||| |||||| ||||   ||||||||| ||||     | ||  ||||||||||||||| ||    
T  36725915 gagcatccacatccataccactcacatgggtggtataaatggatcccacttaattctttatattattttac-----acttctcaattatttaaaccactc 36725821  T
Q  152 aactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||| ||| ||||||| ||||||| || || |||||||||||||| |||| ||||    
T  36725820 aactacaatttctaaatattcataccattcatcaaaaactctaaaatgggtcctacta 36725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 49080738 - 49080887
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| ||||||||||  || |||||||  | |||||||||||||  ||||||||||     ||||||||||||||| ||| ||||||||||||||| |    
T  49080738 agagcacccacatccatgtcatccatatgagttgtataaatgggtcttacataatata-----ttatattacttcacacttttcaattatttaaaccact 49080832  T
Q  151 caactacattttttaaatatccataccactcctctaaaactctaaaatgagtccca 206  Q
      ||||||||||||||||||| |||| | || ||||| ||||||||||| ||||||    
T  49080833 -tactacattttttaaatatcaatactaatcttctaatactctaaaatgggtccca 49080887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 8404777 - 8404844
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  8404777 ttatattatttcacactttccaattatttaaaccactcaattacattttttaaatatccacaccactc 8404844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 29681435 - 29681523
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    |||||||||||| || | || ||| |||||||| ||||| | ||||||||||| |||||||||||| ||||| ||||||| ||||||||    
T  29681435 tatattatattattttatatattcaaattatttgaaccacttaactacattttataaatatccatatcactcatctaaaattctaaaat 29681523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 208
Target Start/End: Original strand, 32485437 - 32485573
Alignment:
Q  58 ccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactac 157  Q
    ||||||||||||||| ||||| | |||||| |||||||||||||||||| |||||||||     ||||||  ||   |||||||||||||| | | |||     
T  32485437 ccacatccataccactcatatcggtggtatcaatgggtcccacataatacattatatta-----cttcacgcttcttaattatttaaaccacttatcta- 32485530  T
Q  158 attttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
            ||||||||||||||||||| |||||||||||||| ||||||||    
T  32485531 --------aatatccataccactcctccaaaactctaaaatgggtcccact 32485573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 8099649 - 8099733
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactcta 194  Q
    ||||||||||||||||||| |||  |||  ||||||  |||||||||||||||||||||||  |||| |||| || |||||||||    
T  8099649 tatattatattacttcacacttttgaatattttaaataattcaactacattttttaaatatttatacaactcatccaaaactcta 8099733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 38994815 - 38994922
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||||||| | ||  ||||| ||||||  |||||| ||||||||| |||||||||||| |||| || |||| | ||||||| |||| | ||    
T  38994815 tatattatattacttcatacttgtcaattttttaaataattcaattacatttttgaaatatccatacaactcatccaaaattttaaaatgggtccaagta 38994914  T
Q  210 tatctaca 217  Q
     |||||||    
T  38994915 aatctaca 38994922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 23870005 - 23869939
Alignment:
Q  115 tatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    |||||||||||||| ||| ||||| ||||||| | | ||||| ||||| ||||||||||||||||||    
T  23870005 tatattacttcacacttttcaattttttaaactacttaactatattttctaaatatccataccactc 23869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 36118086 - 36118156
Alignment:
Q  136 attatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    ||||||||||||| |||| |||||||| ||||||| ||||| |||| || |||||| ||||||| |||||||    
T  36118086 attatttaaaccactcaattacattttctaaatattcatactactcttc-aaaactttaaaatgggtcccac 36118156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 40160413 - 40160314
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||||| ||  ||  ||||||||||||| | ||||||| | ||||||||||||||||| || | || |||| | |||||||  ||||||||    
T  40160413 tatattatattacttaacgcttctcaattatttaaacaactcaactaaaatttttaaatatccatactacccatccaaaattttaaaatggatcccacta 40160314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 42691421 - 42691362
Alignment:
Q  140 tttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    ||||||| | ||||||||||||||||||||| |||||||||| | ||||| | |||||||    
T  42691421 tttaaacgactcaactacattttttaaatattcataccactcatttaaaattttaaaatg 42691362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 23772821 - 23772886
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattat 117  Q
    |||||||||||||||||  ||  ||||||| |||||||||| || ||||| ||||||||||||||||    
T  23772821 agagcatccacatccatgtcattcatatgggtggtataaat-ggacccacttaatatattatattat 23772886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 22790483 - 22790524
Alignment:
Q  134 caattatttaaaccattcaactacattttttaaatatccata 175  Q
    ||||||||||||| ||||||||||||||||  ||||||||||    
T  22790483 caattatttaaacaattcaactacatttttctaatatccata 22790524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 12879285 - 12879349
Alignment:
Q  114 ttatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatacca 178  Q
    ||||||||||||||| ||  ||||||||||||| |  |||||| ||||| ||||||| |||||||    
T  12879285 ttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcatacca 12879349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 41159392 - 41159428
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaac 146  Q
    |||||||||||| |||||| |||||||||||||||||    
T  41159392 tatattatattatttcacactttccaattatttaaac 41159428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 41159463 - 41159519
Alignment:
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtccca 206  Q
    ||||| ||||||| |||||||||||||||| | || |||||||| ||||| ||||||    
T  41159463 tcaaccacattttctaaatatccataccacccatccaaaactctcaaatgggtccca 41159519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 10682634 - 10682481
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||  ||||| |||||||||||     ||||||||||| ||  |||||||||||||||     
T  10682634 tagagcatccacattcattccacccatatggatggtttaaatggaccccacttaatatattat-----attacttcacacttctcaattatttaaaccac 10682540  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||||||||| ||||||||||  ||||| |  |||||||||||||| |||||||||    
T  10682539 tcaactacatttttcaaatatccatgtcactcat-aaaaactctaaaatgggtcccacta 10682481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 2844243 - 2844121
Alignment:
Q  69 ccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaat 168  Q
    ||||| |||||| ||||||||||| ||  |||||||     || |||||||||||||||| || |||||||||||||||| |||||||||||||||||||    
T  2844243 ccaccgatatgggtggtataaatgagtttcacataa-----tacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaat 2844149  T
Q  169 atccataccactcctctaaaactctaaa 196  Q
    || ||||| |||| ||||||||||||||    
T  2844148 attcatactactcatctaaaactctaaa 2844121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 19763539 - 19763638
Alignment:
Q  77 atggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccatac 176  Q
    |||| |||||||| |||||||||| |||||| ||||     ||||||||||| ||||||||||||||||||| | || |||||||| ||||||| |||||    
T  19763539 atgggtggtataactgggtcccacgtaatattttat-----attacttcacactttccaattatttaaaccacttaattacattttctaaatattcatac 19763633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 6313993 - 6314070
Alignment:
Q  129 ttttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||| |||||||||||||   ||||||||||||||||||||| |||| ||||| |  |||||||||||||||||| |||||    
T  6313993 tttttcaattatttaaac---tcaactacattttttaaatattcatagcactctttcaaaactctaaaatgagtctcacta 6314070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 30775332 - 30775423
Alignment:
Q  60 acatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattcaacta 156  Q
    |||||||||  || ||||| | |||||||||||||||| ||||||     || |||||||||||||||| ||| ||||||||||||||| |||||||    
T  30775332 acatccatattacacatataggtggtataaatgggtcctacataa-----tacattatattacttcacacttttcaattatttaaaccactcaacta 30775423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 13685398 - 13685433
Alignment:
Q  82 tggtataaatgggtcccacataatatattatattat 117  Q
    ||||||||||||||||||||||||| ||||||||||    
T  13685398 tggtataaatgggtcccacataatacattatattat 13685433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 30349203 - 30349317
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||||||| | ||  ||| ||||||||| |||||| || | |||| ||||| || | |||||| || ||||||| | |||| |||||||||    
T  30349203 tatattatattacttcatacttctcaaatatttaaacaattcaattataattttgaaatacccgttccactcatccaaaactccacaatgggtcccacta 30349302  T
Q  210 tatctacaataatca 224  Q
     ||| ||| ||||||    
T  30349303 gatccacagtaatca 30349317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 34427149 - 34427053
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtccca 206  Q
    |||||||| |||||| ||| ||   |||||||||||| | |||||||| |||||||||||| ||| |||||  || |||| | ||||||| ||||||    
T  34427149 tatattatgttacttaacacttcttaattatttaaactactcaactactttttttaaatatgcatgccactaatccaaaattttaaaatgggtccca 34427053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 39375834 - 39375700
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| |||||| ||| ||| ||||||||||| |||||||| ||| || ||||||||||||     ||||||||| |||||||||||||||||||||     
T  39375834 tagagcaaccacatacatgccatccatatggatgatataaatgagtctcatataatatattat-----attacttcatattttccaattatttaaaccac 39375740  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaa 189  Q
    ||||||| ||||||||||||||||||||| ||||| ||||    
T  39375739 tcaactatattttttaaatatccataccattcctccaaaa 39375700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 6858965 - 6859106
Alignment:
Q  52 gagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattc 151  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||     || | |||||||||||||| || |||||||||||||||| |     
T  6858965 gagcatccacatccataccacccatatgggtggtataaatgggtcccacgtaa-----tacaatatattacttcacacttcccaattatttaaaccacta 6859059  T
Q  152 aactacattttttaaatatccataccactcctctaaaactctaaaat 198  Q
    ||||| ||||| ||||||||||| |||||  || |||||| ||||||    
T  6859060 aactatattttctaaatatccatgccacttttcaaaaactttaaaat 6859106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 8322243 - 8322144
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| |||||| |||||||||| || ||||||||||||| ||||||||||    
T  8322243 tatattatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcataccactcatccaaaactctaaaataagtcccacta 8322144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 32914584 - 32914431
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    |||||| ||||||||||  || |||||||  | |||||||||||||||| ||||||| ||||||||     ||||||| ||| ||||||||||||||| |    
T  32914584 agagcacccacatccatgtcatccatatgagtagtataaatgggtcccatataatattttatatta-----cttcacacttttcaattatttaaaccact 32914490  T
Q  151 caactacattttt-taaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||||  |||||||||    
T  32914489 caactacatttttctaaatatccataccact-ctcaaaaactctaaaataggtcccacta 32914431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 33386645 - 33386793
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| |||||||||| ||||||| |||  ||||||||||||| ||||||||||||||||          ||| ||| || ||||||||||||||||     
T  33386645 tagagcaaccacatccatgccacccaaatgagtggtataaatgggacccacataatatatta----------ctttacaattcccaattatttaaaccac 33386734  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccact 208  Q
    |||| | |||||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  33386735 tcaattgcattttctaaatattcataccactcctctaaaactctaaaatgggtcccact 33386793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 14657637 - 14657494
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||||||||||| ||  || | |||||| |||||||||||| || ||||||||| ||||||||||     |||||| |||||||||||||||||||     
T  14657637 tagagcatccacatctatggcatctatatgggtggtataaatgg-tcacacataatacattatattat-----ttcacactttccaattatttaaaccac 14657544  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    ||||||||||||| ||||||| |||| |||| ||| ||||||||||||||    
T  14657543 tcaactacattttctaaatattcatatcactgctccaaaactctaaaatg 14657494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 37070027 - 37069875
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||     | || |||||||||||||||| |    
T  37070027 agagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttac-----acttcccaattatttaaaccact 37069933  T
Q  151 caactacatttttt-aaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    |   |||||||||| |||||||||||| |||| ||||||| | |||| || |||||||    
T  37069932 ctcttacatttttttaaatatccatactactcatctaaaattttaaagtgggtcccac 37069875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 9104542 - 9104686
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    ||||||| | ||||||||  ||| ||||||| ||||||||||||||| ||  |||||| |||||||||     |||||| ||  |||||||||||||||     
T  9104542 tagagcacctacatccatctcactcatatgggtggtataaatgggtctcatctaatattttatattat-----ttcacaattctcaattatttaaaccac 9104636  T
Q  150 tcaactacattttttaaatatccataccactcctctaaaactctaaaatg 199  Q
    |||||||||||||||||||||| ||||||||| ||||||| | |||||||    
T  9104637 tcaactacattttttaaatatctataccactcttctaaaattttaaaatg 9104686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 3739611 - 3739492
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccatt 150  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||   |||| ||||||||||      ||||| ||||  ||||||||||||| |    
T  3739611 agagcatccacatccataccacccatatggatggtataaatggatcccattgaatacattatattat-----ctcacactttcttattatttaaaccact 3739517  T
Q  151 caactacattttttaaatatccata 175  Q
     ||||||||||| ||||||||||||    
T  3739516 taactacattttctaaatatccata 3739492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 38610045 - 38609893
Alignment:
Q  49 atagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaacca 148  Q
    |||| |||||||||||||||||||| |||| |||||||||||||| || |||  |||||||||||||||     || ||| ||||  |||||||||||||    
T  38610045 atagtgcatccacatccataccacctatattgatggtataaatggatctcactgaatatattatattat-----tttacactttcttattatttaaacca 38609951  T
Q  149 ttcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
     |||| || ||||| ||||||||||||| ||| ||| |||||| ||||||| |||||||    
T  38609950 ctcaattatattttctaaatatccatactact-ctccaaaactttaaaatgggtcccac 38609893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 43490617 - 43490502
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||| |||||||| || || |||||||||||||   |||||||||||||| |    |||||| ||||||||||  ||||||||||| |||    
T  43490617 tagagcatccacattcataccacgcacattgatggtataaatgaaccccacataatatataa----atattatttcacattttttaattatttaaatcat 43490522  T
Q  150 tcaactacattttttaaata 169  Q
    |||| |||||||||||||||    
T  43490521 tcaaatacattttttaaata 43490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 37258127 - 37258193
Alignment:
Q  51 agagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattat 117  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||| || |||||||||||||||||    
T  37258127 agagcatccacatccatgtcactcatatggatggtataaatgggtctcatataatatattatattat 37258193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 3739987 - 3739849
Alignment:
Q  53 agcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccattca 152  Q
    |||||| ||||||| ||||   ||||||||||||||||| |||| ||||||||| ||||||||||     || | ||||| |||||||||||| ||||||    
T  3739987 agcatcaacatccacaccatttatatggatggtataaataggtctcacataatacattatattat-----tttatatttttcaattatttaaatcattca 3739893  T
Q  153 actacattttttaaatatccataccactcctctaaaactctaaa 196  Q
     |||||| || |||||||  |||||| || ||||||||| ||||    
T  3739892 tctacatattctaaatatttataccattcatctaaaactttaaa 3739849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 40095862 - 40095791
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    ||||||||||||||| ||| ||  ||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  40095862 tatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcataccactc 40095791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 4897318 - 4897252
Alignment:
Q  104 atatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatat 170  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||| | ||||||||||||| |||||||    
T  4897318 atataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatat 4897252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 4944712 - 4944646
Alignment:
Q  104 atatattatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatat 170  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||| | ||||||||||||| |||||||    
T  4944712 atataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatat 4944646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 13250507 - 13250561
Alignment:
Q  152 aactacattttttaaatatccataccactcctctaaaactctaaaatgagtccca 206  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  13250507 aactacattttataaatattcataccactcatctaaaactctaaaatgagtccca 13250561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 3384726 - 3384805
Alignment:
Q  130 tttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||| |||||||||||| ||||||||||||||| ||||||| |||| ||||| || |||| | ||||||| |||||||||    
T  3384726 tttctaattatttaaacaattcaactacattttataaatattcatatcactcatcaaaaaatttaaaatgggtcccacta 3384805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 7395551 - 7395458
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaacca 148  Q
    ||||||| ||| |||||| |||| ||||||| | ||||||||||||||||| |||     ||| ||||||||||||||| ||| |||||||||||||||    
T  7395551 tagagcacccatatccatgccactcatatgggtagtataaatgggtcccacctaa-----tattttatattacttcacacttttcaattatttaaacca 7395458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 5147130 - 5147226
Alignment:
Q  110 tatattatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    ||||||||||||  ||||| || || |||||||||| |||||||||||||||| ||||||| ||||| ||| ||| |||||| ||||| | |||||||    
T  5147130 tatattatattatctcacacttccctattatttaaatcattcaactacattttctaaatattcatactact-ctccaaaactttaaaacgggtcccac 5147226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 18565787 - 18565740
Alignment:
Q  134 caattatttaaaccattcaactacattttttaaatatccataccactc 181  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||    
T  18565787 caattatttaaatgactcaactacattttttaaatatccataccactc 18565740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 7395010 - 7394958
Alignment:
Q  155 tacattttttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    ||||||||| |||||||||||| |||| || |||||||||||||| |||||||    
T  7395010 tacatttttcaaatatccatacaactcatccaaaactctaaaatgggtcccac 7394958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 29794469 - 29794402
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattat 117  Q
    ||||||||||| ||||||||||| ||| | | ||||||||||||   |||| ||||||||||||||||    
T  29794469 tagagcatccatatccataccacacattttggtggtataaatggactccacctaatatattatattat 29794402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 29984935 - 29985009
Alignment:
Q  135 aattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccacta 209  Q
    |||||||||||| | ||||||| |||||||  ||||||||| ||||| || | |||||||||||  |||||||||    
T  29984935 aattatttaaacaactcaactaaattttttgtatatccatatcactcatccataactctaaaatatgtcccacta 29985009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 13772 - 13925
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||     | || ||||||||||||||||     
T  13772 tagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttac-----acttcccaattatttaaaccac 13866  T
Q  150 tcaactacatttt-ttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    ||   |||||||| |||||||||||||| |||| ||||||||| |||| || |||||||    
T  13867 tctcttacatttttttaaatatccatactactcatctaaaactttaaagtgggtcccac 13925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 21509 - 21662
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatattatattacttcacattttccaattatttaaaccat 149  Q
    |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||     | || ||||||||||||||||     
T  21509 tagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttac-----acttcccaattatttaaaccac 21603  T
Q  150 tcaactacatttt-ttaaatatccataccactcctctaaaactctaaaatgagtcccac 207  Q
    ||   |||||||| |||||||||||||| |||| ||||||||| |||| || |||||||    
T  21604 tctcttacatttttttaaatatccatactactcatctaaaactttaaagtgggtcccac 21662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 3628 - 3562
Alignment:
Q  50 tagagcatccacatccataccacccatatggatggtataaatgggtcccacataatatattatatta 116  Q
    |||||||||||||| ||| |||||||||||| |||| ||||| |  ||||| |||||||||||||||    
T  3628 tagagcatccacattcattccacccatatgggtggtttaaatagaccccacttaatatattatatta 3562  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 38020 - 37923
Alignment:
Q  115 tatattacttcacattttccaattatttaaaccattcaactacattttttaaatatccataccactcctctaaaactctaaaatgagtcccactatat 212  Q
    ||||||| || ||| ||||||||||||||||||| ||   ||||||||||||||||  |||| || | ||||||||| |||| || ||||||| ||||    
T  38020 tatattattttacactttccaattatttaaaccactctcttacattttttaaatatttatactacccgtctaaaactttaaagtgggtcccacaatat 37923  T

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