View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14380_high_8 (Length: 267)
Name: NF14380_high_8
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14380_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 45546613 - 45546358
Alignment:
| Q |
1 |
atactatacttggtagtttttaagtttgaagcannnnnnnctactttatttgaatctattttggatgcagtgacattgacacatggaccagaagagccca |
100 |
Q |
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| T |
45546613 |
atactatacttggtagtttttaagtttgaagcatttttttctactttatttgaatctattttggatgaagtgacactgacacatggaccagaagagccca |
45546514 |
T |
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| Q |
101 |
ctgagcctgagcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgt |
200 |
Q |
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| T |
45546513 |
ctaattctgagcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgt |
45546414 |
T |
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| Q |
201 |
atttgatcatggtagtggacatgacactgaaactcagcatattcctgatgatgatg |
256 |
Q |
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| T |
45546413 |
atttgatcatggtagtggacatgacactgaaactcagcatattcctgatgatgatg |
45546358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 45551732 - 45551601
Alignment:
| Q |
121 |
gagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggac |
220 |
Q |
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| T |
45551732 |
gagaagaaatctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaattaaaaaacacggtcaacaagtacttgatcatggtaatggac |
45551633 |
T |
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| Q |
221 |
atgacactgaaactcagcatattcctgatgat |
252 |
Q |
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| T |
45551632 |
ataacaatgaaattcagcatactcatgatgat |
45551601 |
T |
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