View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14380_low_1 (Length: 484)
Name: NF14380_low_1
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14380_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 43588264 - 43587808
Alignment:
| Q |
1 |
ttggtacgtgagaatgaaacatatgttagagaacttgaagagacgcagaaacaactgaaggaaattttcaatgagcgtcttgaatcgataagggaggaaa |
100 |
Q |
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| T |
43588264 |
ttggtacgtgagaatgaaacatatgttagagaacttgaagagacgcagaaacaactgaaggaaattttcaatgagcgtcttgaatcgataagggaggaaa |
43588165 |
T |
|
| Q |
101 |
gagaacagcttcttggggatttgcaagtaaggaaggtacaattgtattgttctgaagagaatatatctgatcaagcttttgcggagtatctccaaaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43588164 |
gagaacagcttcttggggatttgcaagtaaggaaggtacaattgtattgttctgaagagaatatatctgatcaagcttttgcagagtatctccaaaactc |
43588065 |
T |
|
| Q |
201 |
tgagatgattaaaggtgtattcgagaaggagattagtaaagtccaggctaccatcgaggagattatgtcggatgtgaaacctgctctaacttttaaagcc |
300 |
Q |
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| T |
43588064 |
tgagatgattaaaggtgtattcgagaaggagatgaggaaagtccaggatactatcgaggagattatgtcggatgtgaaacctgctctaacttttaaagcc |
43587965 |
T |
|
| Q |
301 |
aagtcgaaactattgtctcttgagtttgatatattttctcccaccattattcgggagaaagatacaaggtagaatctatatttatgcc--nnnnnnnnnn |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43587964 |
aagtcgaaactattgtctcttgagtttgatatattttctcccaccattattcgggagaaatatacaaggtagaatctatatttatgcctttttttttttg |
43587865 |
T |
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| Q |
399 |
nnggcattcttgttagcaagcattatatgagtttactttgattattgttccttattc |
455 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43587864 |
ttggtattcttgttagcaagcattatatgagtttactttgaatattgttccttattc |
43587808 |
T |
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