View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14380_low_5 (Length: 417)
Name: NF14380_low_5
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14380_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 47101160 - 47100771
Alignment:
| Q |
11 |
cacagagaactctcacattggtgtgtggcaaaagcgtgctgggaagtgttctgaatcaaattgggttatgactgttcagcttggcaaaaagatgagtgta |
110 |
Q |
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| T |
47101160 |
cacagagaactctcacattggtgtgtggcaaaagcgtgctgggaagtgttctgaatcaaattgggttatgactgttcagcttgggaaaaagatgagtgta |
47101061 |
T |
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| Q |
111 |
acccaagatagtggtagtagcagtagtagtgtggcaccttcatcggctgtcgcaaccgaagaggaaattgtgcgaggagagattgatgaagaagatagaa |
210 |
Q |
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| T |
47101060 |
acccaagatagtggtagtagcagtagtagtgtggcaccttcatcggcggtcgcaaccgaagaggaaattgtgcgaggagagattgatgaagaagatagaa |
47100961 |
T |
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| Q |
211 |
ttgcacttcaaatgatagaggaacttcttaatgacaagaactgtcctagcccatcaattaacaatattaagcaaggggatgatattgataacagcttttt |
310 |
Q |
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| T |
47100960 |
ttgcacttcaaatgatagaggaacttcttaatgacaagaactgtcctagcccatcaattaacaatattaagcaaggggatgatattgataacagcttttt |
47100861 |
T |
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| Q |
311 |
tctttaaaatagtcgttacttattgatctctataatatatagtattcacgtgttaattaatttaatctctcttttatcaaggtcattatt |
400 |
Q |
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| T |
47100860 |
tctttaaaatagtcgttacttattgatctctatattatatagtattcacgtgttaattaatttaatctctcttttatcaagttcattatt |
47100771 |
T |
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