View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14380_low_6 (Length: 339)

Name: NF14380_low_6
Description: NF14380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14380_low_6
NF14380_low_6
[»] chr5 (1 HSPs)
chr5 (41-339)||(16195369-16195664)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 41 - 339
Target Start/End: Original strand, 16195369 - 16195664
Alignment:
Q  41 aaagagagcaattttgaggtgttcattgaataaccatnnnnnnntctagtgaacctaaaaggaaccttacgacaatccgggtatgggctcgtattggatt 140  Q
    ||||||||||||||||||||||| ||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16195369 aaagagagcaattttgaggtgtttattgaataatcataaaaa--tctagtgaacctaaaaggaaccttacgacaatccgggtatgggctcgtattgtatt 16195466  T
Q  141 attgatctatatagtacatgagatcctaataaaggctcacaacttgtgcaattaaataaactagacctaaagataattgctctttaaggtctatattggt 240  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  16195467 attgatctatatagtacatgagatcttaataaaggctcacaacttgtgcaattaaataaactagatctaaagataattgctcttt-aggtctatattggt 16195565  T
Q  241 ttgaagctctcttgatttattagaagatattttttcgatgtatctttttactctttttgcccatcgaaagatatctttcgatgatgtattttgtctgtg 339  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16195566 ttgaagctctcccgatttattagaagatattttttcgatgtatctttttactctttttgcccatcgaaagatatctttcgatgatgtattttgtctgtg 16195664  T

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