View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14381_high_1 (Length: 587)

Name: NF14381_high_1
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14381_high_1
NF14381_high_1
[»] chr4 (17 HSPs)
chr4 (52-573)||(7291502-7292022)
chr4 (386-444)||(37970177-37970235)
chr4 (385-444)||(3936626-3936685)
chr4 (384-433)||(27655729-27655778)
chr4 (386-429)||(10069106-10069149)
chr4 (381-444)||(25404654-25404717)
chr4 (386-433)||(44383448-44383495)
chr4 (386-444)||(16451209-16451267)
chr4 (391-433)||(31760251-31760293)
chr4 (384-441)||(6087745-6087802)
chr4 (380-433)||(21623433-21623486)
chr4 (380-441)||(50668334-50668395)
chr4 (392-444)||(1432862-1432914)
chr4 (384-444)||(19854563-19854623)
chr4 (385-441)||(20383487-20383543)
chr4 (391-446)||(39651666-39651722)
chr4 (380-432)||(48251923-48251975)
[»] chr1 (18 HSPs)
chr1 (8-123)||(44339563-44339678)
chr1 (8-98)||(13567985-13568074)
chr1 (386-444)||(16580802-16580860)
chr1 (380-432)||(45190284-45190336)
chr1 (386-441)||(25532973-25533028)
chr1 (386-429)||(44208796-44208839)
chr1 (375-433)||(9265850-9265908)
chr1 (386-444)||(10132447-10132505)
chr1 (384-446)||(15382820-15382882)
chr1 (379-432)||(8253732-8253785)
chr1 (377-430)||(34632160-34632213)
chr1 (380-433)||(50157816-50157869)
chr1 (386-438)||(3509950-3510002)
chr1 (392-444)||(29233977-29234029)
chr1 (397-441)||(32560984-32561028)
chr1 (397-433)||(32950775-32950811)
chr1 (380-444)||(34766854-34766918)
chr1 (397-444)||(45774585-45774633)
[»] chr6 (5 HSPs)
chr6 (386-444)||(9111047-9111105)
chr6 (384-433)||(12700435-12700484)
chr6 (384-444)||(655752-655812)
chr6 (386-433)||(34701147-34701194)
chr6 (386-414)||(7730664-7730692)
[»] chr3 (14 HSPs)
chr3 (380-441)||(25441506-25441567)
chr3 (385-444)||(13042803-13042862)
chr3 (385-444)||(13050880-13050939)
chr3 (386-444)||(7938724-7938782)
chr3 (387-444)||(38894038-38894095)
chr3 (384-432)||(25289328-25289376)
chr3 (380-432)||(38330767-38330819)
chr3 (384-444)||(39408267-39408327)
chr3 (384-444)||(53996297-53996357)
chr3 (386-444)||(1743993-1744051)
chr3 (380-433)||(31214628-31214681)
chr3 (391-444)||(52575952-52576005)
chr3 (380-432)||(6901469-6901521)
chr3 (380-444)||(19468445-19468509)
[»] chr7 (12 HSPs)
chr7 (386-444)||(9522912-9522970)
chr7 (397-444)||(37624554-37624601)
chr7 (386-441)||(39280824-39280879)
chr7 (386-444)||(7872751-7872809)
chr7 (386-432)||(27279418-27279464)
chr7 (386-444)||(41029272-41029330)
chr7 (392-444)||(5483336-5483389)
chr7 (380-441)||(7670428-7670489)
chr7 (391-444)||(44410603-44410656)
chr7 (385-441)||(30296332-30296388)
chr7 (389-444)||(36765501-36765557)
chr7 (389-444)||(36769153-36769209)
[»] chr2 (10 HSPs)
chr2 (387-433)||(29872186-29872232)
chr2 (386-433)||(26999110-26999157)
chr2 (386-444)||(25598565-25598623)
chr2 (391-444)||(34912584-34912638)
chr2 (386-443)||(13196700-13196757)
chr2 (384-445)||(18557105-18557166)
chr2 (384-440)||(833076-833132)
chr2 (399-443)||(18782544-18782588)
chr2 (385-433)||(30799102-30799150)
chr2 (385-429)||(37670499-37670543)
[»] chr8 (14 HSPs)
chr8 (392-433)||(22941198-22941239)
chr8 (384-441)||(24195247-24195304)
chr8 (386-432)||(20469326-20469372)
chr8 (383-441)||(40679735-40679793)
chr8 (382-432)||(42932243-42932293)
chr8 (387-440)||(9055412-9055465)
chr8 (375-432)||(19734304-19734361)
chr8 (384-441)||(32421567-32421624)
chr8 (384-441)||(40795375-40795432)
chr8 (379-444)||(42829478-42829543)
chr8 (377-433)||(8148441-8148497)
chr8 (380-444)||(26914074-26914138)
chr8 (397-441)||(27134426-27134470)
chr8 (381-433)||(30427726-30427778)
[»] chr5 (13 HSPs)
chr5 (397-444)||(31708149-31708196)
chr5 (386-444)||(37932330-37932388)
chr5 (384-441)||(12189990-12190047)
chr5 (384-429)||(14188353-14188398)
chr5 (392-441)||(27903119-27903168)
chr5 (383-432)||(31602840-31602889)
chr5 (377-441)||(10704337-10704401)
chr5 (397-441)||(13864355-13864399)
chr5 (384-444)||(32675296-32675356)
chr5 (397-437)||(33645699-33645739)
chr5 (397-444)||(37147000-37147048)
chr5 (384-432)||(37791178-37791226)
chr5 (386-430)||(43359090-43359134)


Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 52 - 573
Target Start/End: Complemental strand, 7292022 - 7291502
Alignment:
Q  52 aaacaataacaatgttcaatggattgaaaatgtgatactgatgatgaagatgaagaatggaaagttctggattatgtcgtgaagagggttgttggtagtt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7292022 aaacaataacaatgttcaatggattgaaaatgtgatactgatgatgaagatgaagaatggaaagttctggattatgtcgtgaagagggttgttggtagtt 7291923  T
Q  152 ttggaacactggagaaacagtgtgtacgtggaagtttgtaaccaatacaaaacaaacatgtgtacaacttagacaagattcgtgagatttgggcgtacac 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  7291922 ttggaacactggagaaacagtgtgtacgtggaagtttgtaaccaatacaaaacaaacatgtgtacaa---agacaagattcgtgagatttgggcgtacac 7291826  T
Q  252 aa-ggaggtgattaatggcaaaattgtttcaataacatttaacttaattttacattata-nnnnnnnnncgatttagtcttttaagttctgaaatgctat 349  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||          | |||||||||||||||||||||||||||||    
T  7291825 aagggaggtgattaatggcaaaattgattcaataacatttaacttaattttacattatattttttttttcaatttagtcttttaagttctgaaatgctat 7291726  T
Q  350 taccgttgttctttcttaaatgggatgaaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaaacata 449  Q
    ||||||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  7291725 taccgttgtcctttcttaaatgggatgaaagtctttatgagtttagttcagttggtataaataatctataatatatgcaaggtcggggattcgaaacata 7291626  T
Q  450 tcaccatcaaaaaagatggggttgtgaaacaatttgtttcattaatcatttaacttaatttttggtcatttatatacagggatgtgactaagaaagtatt 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7291625 tcaccatcaaaaaagatggggttgtgaaacaatttgtttcattaatcatttaacttaatttttggtcatttatataccgggatgtgactaagaaagtatt 7291526  T
Q  550 gctactatcatgtatgtagtatgt 573  Q
    ||||||||||||||||||||||||    
T  7291525 gctactatcatgtatgtagtatgt 7291502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 37970235 - 37970177
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||||||| ||||||||||||||| ||| ||||||||||| || ||||||||||||||    
T  37970235 gtgaacttaattcagttggtataaaaaatgtataatatatgtaaagtcgggggttcgaa 37970177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 3936626 - 3936685
Alignment:
Q  385 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||| ||||| ||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  3936626 tgtgagcttagctcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaa 3936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 27655729 - 27655778
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||||||||||||||| || |||||||  |||||||||||||||||    
T  27655729 ttgtgaacttagttcagttgatagaaacaatgcataatatatgcaaggtc 27655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 10069149 - 10069106
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaa 429  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||    
T  10069149 gtgaacttagctcagttggtatgaacaatgtataatatatgcaa 10069106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 25404654 - 25404717
Alignment:
Q  381 tctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| |||| ||||| |||||| ||| | ||||| ||||||||||| |||||||||||||||||    
T  25404654 tcttcgtgagcttagatcagttagtaaagacaatatataatatatgtaaggtcgggggttcgaa 25404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 44383448 - 44383495
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||||| |||||||||||||||||| ||||| ||||| ||||||    
T  44383448 gtgaacttagctcagttggtataaacaatatataaaatatgtaaggtc 44383495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 16451209 - 16451267
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||  |||||||||| |||||||  ||||| |||||||||||||| |||||||    
T  16451209 gtgaacttaactcagttggtacaaacaatgcataatttatgcaaggtcgggagttcgaa 16451267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 31760251 - 31760293
Alignment:
Q  391 cttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||    
T  31760251 cttagctcagttggtatagacaatgtataatatatgcaaggtc 31760293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 6087745 - 6087802
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||| ||||| |||||||||||| | |||  ||||||||||||||||| |||||||    
T  6087745 ttgtgagcttagctcagttggtatagataatgcataatatatgcaaggtctggggttc 6087802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 21623486 - 21623433
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    ||||| |||||||||||||||||||||   |||||  |||||||||||||||||    
T  21623486 gtcttcgtgaacttagttcagttggtagggacaatgcataatatatgcaaggtc 21623433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 50668334 - 50668395
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    ||||| ||||||||| |||||||||||| ||||||  |||||||||| |||||  |||||||    
T  50668334 gtcttcgtgaacttaattcagttggtatgaacaatacataatatatgtaaggttcggggttc 50668395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 1432862 - 1432914
Alignment:
Q  392 ttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| ||||||||||  |||| | |||||||||||||||||| ||||||||||    
T  1432862 ttagctcagttggtaagaacagtgtataatatatgcaaggtccggggttcgaa 1432914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 19854563 - 19854623
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||| ||||| |||||||||||  |||||  |||||||||||||| || ||||||||||    
T  19854563 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaagatccggggttcgaa 19854623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 20383487 - 20383543
Alignment:
Q  385 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    ||||| ||||| |||||||||||  |||||  ||||||||||||||||| |||||||    
T  20383487 tgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttc 20383543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 39651666 - 39651722
Alignment:
Q  391 cttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaaac 446  Q
    ||||| ||||||| |||| ||||| ||||| |||||||||||||| |||||||||||    
T  39651666 cttagctcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaaac 39651722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 48251975 - 48251923
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    |||||| |||| |||| ||||||| ||| |||||| |||||||||||||||||    
T  48251975 gtctttatgaatttagctcagttgatatgaacaatgtataatatatgcaaggt 48251923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 44339563 - 44339678
Alignment:
Q  8 tgagatgaacctgccattgaattgaattgaatttgataaagacaaaacaataacaatgttcaatggattgaaaatgtgatactgatgatgaagatgaaga 107  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||| ||||||  |||||||||||||||||||||||| ||||||  ||||||||    
T  44339563 tgagatgaacctgccattgaattgaaccgaatttgatagagacaaaacaaaaacaatactcaatggattgaaaatgtgatacttatgatgccgatgaaga 44339662  T
Q  108 atggaaagttctggat 123  Q
    |  ||| |||||||||    
T  44339663 aaagaaggttctggat 44339678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 13567985 - 13568074
Alignment:
Q  8 tgagatgaacctgccattgaattgaattgaatttgataaagacaaaacaataacaatgttcaatggattgaaaatgtgatactgatgatga 98  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||  || |||||||||||| ||||||||||||||||    
T  13567985 tgagatgaacctgccattaaattgaattgaatttgatagagacaaaacaaaaacaatactc-atggattgaaaaggtgatactgatgatga 13568074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 16580860 - 16580802
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| |||| ||||||||||||  ||||| |||||||||||||||||| ||||||||||    
T  16580860 gtgagcttaattcagttggtatggacaatgtataatatatgcaaggtctggggttcgaa 16580802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 45190336 - 45190284
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    ||||| ||||||||||||||||||||||  |||||  ||||||||||||||||    
T  45190336 gtcttcgtgaacttagttcagttggtatggacaatgcataatatatgcaaggt 45190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 25532973 - 25533028
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||| |||||||||||||||||  |||||  ||||||||||||||||| |||||||    
T  25532973 gtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccggggttc 25533028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Complemental strand, 44208839 - 44208796
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaa 429  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||    
T  44208839 gtgaacatagctcagttggtataaacaatatataatatatgcaa 44208796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 9265908 - 9265850
Alignment:
Q  375 tgaaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||| |||||||||||  |||||||||||  ||||| ||||||| ||||||||||    
T  9265908 tgaaagtcattgtgaacttaactcagttggtatggacaatgtataatacatgcaaggtc 9265850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 10132505 - 10132447
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||| ||||||||||   |||||  ||||||||||||||||| ||||||||||    
T  10132505 gtgaacttagatcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 10132447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 15382882 - 15382820
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaaac 446  Q
    |||||| ||||  ||||||| ||| |||||| |||||||||||||||||| | ||||||||||    
T  15382882 ttgtgagcttaactcagttgatatgaacaatgtataatatatgcaaggtccgaggttcgaaac 15382820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 8253732 - 8253785
Alignment:
Q  379 agtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    ||||||||||| ||||| |||||||||||  |||||  ||||||||||||||||    
T  8253732 agtctttgtgagcttagctcagttggtatggacaatgcataatatatgcaaggt 8253785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 34632160 - 34632213
Alignment:
Q  377 aaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaag 430  Q
    |||||| | |||| ||||| |||||||||||| ||||| |||||||||||||||    
T  34632160 aaagtcctcgtgagcttagctcagttggtatagacaatgtataatatatgcaag 34632213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 50157869 - 50157816
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||||||| |||||||| || | |  ||||||||||||||||||||||||    
T  50157869 gtctttgtgaacatagttcagctgatttggacaatctataatatatgcaaggtc 50157816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 3510002 - 3509950
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcggggg 438  Q
    |||||||||| |||||||||||  |||||  ||||||||||||||||| ||||    
T  3510002 gtgaacttagctcagttggtatggacaatgcataatatatgcaaggtccgggg 3509950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 29234029 - 29233977
Alignment:
Q  392 ttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| |||||||||||| |||||  |||| |||||||||||| ||||||||||    
T  29234029 ttagctcagttggtatagacaatgcataaaatatgcaaggtctggggttcgaa 29233977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 32560984 - 32561028
Alignment:
Q  397 tcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||||||||  ||||| |||||||||||||||||| |||||||    
T  32560984 tcagttggtatggacaatgtataatatatgcaaggtccggggttc 32561028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 32950811 - 32950775
Alignment:
Q  397 tcagttggtataaacaatctataatatatgcaaggtc 433  Q
    ||||||||||||||||||  |||||||||||||||||    
T  32950811 tcagttggtataaacaatgcataatatatgcaaggtc 32950775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 34766854 - 34766918
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||| |||| ||||  |||||||||||  ||||| ||||||| |||||||||| ||||||||||    
T  34766854 gtcttcgtgagcttaactcagttggtatggacaatgtataatacatgcaaggtctggggttcgaa 34766918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 444
Target Start/End: Original strand, 45774585 - 45774633
Alignment:
Q  397 tcagttggtataaacaatctataata-tatgcaaggtcgggggttcgaa 444  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||||||||    
T  45774585 tcagttggtataaacaatacataataatatgcaaggtccggggttcgaa 45774633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 9111047 - 9111105
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| ||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  9111047 gtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaa 9111105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 12700484 - 12700435
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||||    
T  12700484 ttgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtc 12700435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 655812 - 655752
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||| ||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||    
T  655812 ttgtgagcttagctcagttggtatcgacaatgcataatatatgcaaggtccggggttcgaa 655752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 34701147 - 34701194
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||    
T  34701147 gtgaacttagttcagttggtaggaacaatgcataatatatgcaaggtc 34701194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 414
Target Start/End: Original strand, 7730664 - 7730692
Alignment:
Q  386 gtgaacttagttcagttggtataaacaat 414  Q
    |||||||||||||||||||||||||||||    
T  7730664 gtgaacttagttcagttggtataaacaat 7730692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 25441567 - 25441506
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||||||||||||| |||||||||||  |||||  ||||||||||||||||| |||||||    
T  25441567 gtctttgtgaacttagctcagttggtatggacaatgcataatatatgcaaggtctggggttc 25441506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 13042862 - 13042803
Alignment:
Q  385 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||| ||||| |||||||||| | ||||| |||||||||||||||||| ||||||||||    
T  13042862 tgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaa 13042803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 13050939 - 13050880
Alignment:
Q  385 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||| ||||| |||||||||| | ||||| |||||||||||||||||| ||||||||||    
T  13050939 tgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaa 13050880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 7938724 - 7938782
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| ||||||||||||||||| ||||||  ||||||||| ||||||| ||||||||||    
T  7938724 gtgagcttagttcagttggtatgaacaatgcataatatatacaaggtctggggttcgaa 7938782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 38894038 - 38894095
Alignment:
Q  387 tgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||||||| ||||||| ||| |||||| ||||| |||||||||||| ||||||||||    
T  38894038 tgaacttagctcagttgatatgaacaatgtataaaatatgcaaggtccggggttcgaa 38894095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 25289376 - 25289328
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  25289376 ttgtgaacttagctcagttggtaaaaacaatgtataatatatgtaaggt 25289328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 38330819 - 38330767
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    ||||| |||| ||||| ||| |||||||||||||| |||||||||||||||||    
T  38330819 gtcttcgtgagcttagctcaattggtataaacaatatataatatatgcaaggt 38330767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 39408327 - 39408267
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||| ||||||||| ||| | |||| ||| |||||||||||||||||| ||||||||||    
T  39408327 ttgtgagcttagttcaattgatttaaataatgtataatatatgcaaggtctggggttcgaa 39408267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 53996297 - 53996357
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||| ||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||    
T  53996297 ttgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctggggttcgaa 53996357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 1744051 - 1743993
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||||||| ||||||||||||  |||||  ||||||||||||||||  ||||||||||    
T  1744051 gtgaacttaattcagttggtatggacaatacataatatatgcaaggttcggggttcgaa 1743993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 31214628 - 31214681
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||||||||||||| |||||||| ||| |||  |||||||||| ||||||    
T  31214628 gtctttgtgaacttagttaagttggtagaaataatgcataatatatgtaaggtc 31214681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 52575952 - 52576005
Alignment:
Q  391 cttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||| ||||||||||| ||||||  |||| |||||||||||| ||||||||||    
T  52575952 cttagctcagttggtatgaacaatgcataaaatatgcaaggtctggggttcgaa 52576005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 6901521 - 6901469
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    ||||| |||| ||||| ||||||||||  |||||| |||||||||||||||||    
T  6901521 gtcttagtgagcttagctcagttggtaggaacaatgtataatatatgcaaggt 6901469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 19468445 - 19468509
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||| ||||  |||||||||||  |||||  ||||||||||||||||| | ||||||||    
T  19468445 gtctttgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtccgtggttcgaa 19468509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 9522912 - 9522970
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||| ||||||||||| ||||||  ||||||||||||||||  ||||||||||    
T  9522912 gtgaacttagctcagttggtatgaacaatgcataatatatgcaaggtttggggttcgaa 9522970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 444
Target Start/End: Original strand, 37624554 - 37624601
Alignment:
Q  397 tcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||||  |||||  ||||||||||||||||||||||||||||    
T  37624554 tcagttggtatggacaatgcataatatatgcaaggtcgggggttcgaa 37624601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 39280879 - 39280824
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||||||| ||||||||||  ||||||  ||||||||||||||||| |||||||    
T  39280879 gtgaacttagctcagttggtaagaacaatgcataatatatgcaaggtccggggttc 39280824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 7872809 - 7872751
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||| ||||||||||   |||||  ||||||||||||||||| ||||||||||    
T  7872809 gtgaacttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 7872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 27279464 - 27279418
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  27279464 gtgaacttagttcagttagtatagacaatgtataatatatgtaaggt 27279418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 41029272 - 41029330
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| ||||| ||||||||||   ||||| |||||||||||||||||| ||||||||||    
T  41029272 gtgagcttagctcagttggtaaggacaatgtataatatatgcaaggtccggggttcgaa 41029330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 5483336 - 5483389
Alignment:
Q  392 ttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 444  Q
    |||| ||||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  5483336 ttagctcagttgatataaacaatgtataaatatatgcaaggtcgcgggttcgaa 5483389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 7670428 - 7670489
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    ||||| |||| ||||| ||||||||| | ||||||  ||||||||||||||||| |||||||    
T  7670428 gtcttcgtgagcttagctcagttggtttgaacaatgcataatatatgcaaggtccggggttc 7670489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 44410603 - 44410656
Alignment:
Q  391 cttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||||||| ||  ||||| |||||||||| ||||||| ||||||||||    
T  44410603 cttagttcagttggcatggacaatgtataatatatacaaggtccggggttcgaa 44410656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 30296332 - 30296388
Alignment:
Q  385 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    ||||| ||||| ||||||||||   ||||| |||||||||||||||||| |||||||    
T  30296332 tgtgagcttagctcagttggtaaggacaatgtataatatatgcaaggtctggggttc 30296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 36765501 - 36765557
Alignment:
Q  389 aacttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 444  Q
    ||||||| ||||||| |||| ||||| ||||| |||||||||||||| |||||||||    
T  36765501 aacttagctcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaa 36765557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 36769153 - 36769209
Alignment:
Q  389 aacttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 444  Q
    ||||||| ||||||| |||| ||||| ||||| |||||||||||||| |||||||||    
T  36769153 aacttagctcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaa 36769209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 29872232 - 29872186
Alignment:
Q  387 tgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  29872232 tgaacttagttcagttggtatgaacaatacataatatatgcaaggtc 29872186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 26999110 - 26999157
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    ||||||||||||||||||||| | |||||  |||||||||||||||||    
T  26999110 gtgaacttagttcagttggtagagacaatgcataatatatgcaaggtc 26999157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 25598623 - 25598565
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||||||| |||||||||||  |||||  |||||||||||||||||  |||||||||    
T  25598623 gtgaacttagctcagttggtatggacaatgcataatatatgcaaggtccagggttcgaa 25598565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 34912584 - 34912638
Alignment:
Q  391 cttagttcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 444  Q
    ||||||||||||| |||| ||||| ||||| |||||||||||||| |||||||||    
T  34912584 cttagttcagttgatatagacaatgtataaatatatgcaaggtcgcgggttcgaa 34912638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 13196700 - 13196757
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcga 443  Q
    |||||||||  ||||||||||| ||||||  ||||||||||||||||  |||||||||    
T  13196700 gtgaacttaactcagttggtatgaacaatgcataatatatgcaaggttcggggttcga 13196757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 18557105 - 18557166
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaaa 445  Q
    |||||||||||| ||||||||||  |||| | |||||||| ||||||||| | |||||||||    
T  18557105 ttgtgaacttagctcagttggtaataacagtgtataatatctgcaaggtctgaggttcgaaa 18557166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 833132 - 833076
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggtt 440  Q
    ||||||||| || |||||||||||  |||||  ||||||||||||||||| ||||||    
T  833132 ttgtgaactcagctcagttggtatggacaatgcataatatatgcaaggtctggggtt 833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 18782588 - 18782544
Alignment:
Q  399 agttggtataaacaatctataatatatgcaaggtcgggggttcga 443  Q
    |||||||| |||||||  ||||||||||||||||| |||||||||    
T  18782588 agttggtagaaacaatgcataatatatgcaaggtctggggttcga 18782544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 30799150 - 30799102
Alignment:
Q  385 tgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||||| ||||||||||| |||||||  |||||||||| ||||||    
T  30799150 tgtgaacttatttcagttggtagaaacaatgcataatatatgtaaggtc 30799102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 37670543 - 37670499
Alignment:
Q  385 tgtgaacttagttcagttggtataaacaatctataatatatgcaa 429  Q
    ||||||||||| ||||||||||  |||||| ||||||||||||||    
T  37670543 tgtgaacttagctcagttggtaagaacaatgtataatatatgcaa 37670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 22941198 - 22941239
Alignment:
Q  392 ttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  22941198 ttagttcagttggtatgaacaatttataatatatgcaaggtc 22941239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 24195247 - 24195304
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||||||||| ||||||| ||| ||||||  ||||||||||||||||| |||||||    
T  24195247 ttgtgaacttagctcagttgatatgaacaatacataatatatgcaaggtccggggttc 24195304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 20469372 - 20469326
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    |||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  20469372 gtgagcttagatcagttggtataaacaatgcataatatatgcaaggt 20469326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 441
Target Start/End: Complemental strand, 40679793 - 40679735
Alignment:
Q  383 tttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    ||||||||||||| |||||||||||   |||| ||||| |||||||||||| |||||||    
T  40679793 tttgtgaacttagctcagttggtatggtcaatatataaaatatgcaaggtccggggttc 40679735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 432
Target Start/End: Complemental strand, 42932293 - 42932243
Alignment:
Q  382 ctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    ||||||||  |||||||| |||||||||||||| ||||||||||| |||||    
T  42932293 ctttgtgagtttagttcacttggtataaacaatgtataatatatgtaaggt 42932243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 9055465 - 9055412
Alignment:
Q  387 tgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggtt 440  Q
    ||||||||| ||||||| || ||| ||| |||||||||||||||||| ||||||    
T  9055465 tgaacttagctcagttgataaaaataatgtataatatatgcaaggtctggggtt 9055412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 19734304 - 19734361
Alignment:
Q  375 tgaaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    |||||||| |||| ||||||| ||||||||| | ||||||  ||||||||||||||||    
T  19734304 tgaaagtccttgtaaacttagctcagttggtttgaacaatacataatatatgcaaggt 19734361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 32421567 - 32421624
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||| ||||  |||||||||||  ||||| |||||||||||||||||| |||||||    
T  32421567 ttgtgagcttaactcagttggtatggacaatatataatatatgcaaggtccggggttc 32421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 40795375 - 40795432
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||| ||||  ||||||||||| ||||||  ||||||||||||||||| |||||||    
T  40795375 ttgtgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttc 40795432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 42829543 - 42829478
Alignment:
Q  379 agtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||||||||  ||||| |||||||||||  ||||  ||||| |||||||||||| ||||||||||    
T  42829543 agtctttgtgggcttagctcagttggtatggacaaaatataaaatatgcaaggtctggggttcgaa 42829478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 8148497 - 8148441
Alignment:
Q  377 aaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    |||||||| |||| ||||| ||| |||||||  ||||| ||||||||||||||||||    
T  8148497 aaagtcttcgtgatcttagctcaattggtatggacaatgtataatatatgcaaggtc 8148441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 26914138 - 26914074
Alignment:
Q  380 gtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||| |||| ||||||||||||| |||| | ||| ||||| ||||| |||||| ||||||||||    
T  26914138 gtcttcgtgagcttagttcagttgctatagataatgtataaaatatgtaaggtctggggttcgaa 26914074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 27134470 - 27134426
Alignment:
Q  397 tcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    ||||||||||| |||||| |||||||||||||| ||| |||||||    
T  27134470 tcagttggtatgaacaatgtataatatatgcaaagtccggggttc 27134426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 30427726 - 30427778
Alignment:
Q  381 tctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtc 433  Q
    ||||||||| ||||| |||||||||||  |||||  |||||||||||||||||    
T  30427726 tctttgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtc 30427778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 444
Target Start/End: Complemental strand, 31708196 - 31708149
Alignment:
Q  397 tcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    ||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  31708196 tcagttggtatgaacaatgcataatatatgcaaggtctggggttcgaa 31708149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 37932330 - 37932388
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||| ||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||    
T  37932330 gtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcgaa 37932388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 12189990 - 12190047
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||||||||| | |||||||||  |||||  |||||||||| ||||||||||||||    
T  12189990 ttgtgaacttagcttagttggtatggacaatacataatatatgtaaggtcgggggttc 12190047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 14188398 - 14188353
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaa 429  Q
    |||||| |||||||||||||||||  |||||| |||||||||||||    
T  14188398 ttgtgagcttagttcagttggtatggacaatccataatatatgcaa 14188353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 27903119 - 27903168
Alignment:
Q  392 ttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||||||||||||| ||||||  ||||||||||||||||  |||||||    
T  27903119 ttagttcagttggtatgaacaatgcataatatatgcaaggttcggggttc 27903168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 31602889 - 31602840
Alignment:
Q  383 tttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    ||||||| ||||| ||||||||||| ||||||  ||||||||||||||||    
T  31602889 tttgtgaccttagctcagttggtatgaacaatgcataatatatgcaaggt 31602840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 10704401 - 10704337
Alignment:
Q  377 aaagtctttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    |||||| |||||| ||||| |||||||||||  |||||  |||| |||||||||||| |||||||    
T  10704401 aaagtccttgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccggggttc 10704337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 13864355 - 13864399
Alignment:
Q  397 tcagttggtataaacaatctataatatatgcaaggtcgggggttc 441  Q
    ||||||||||| ||||||  ||||||||||||||||| |||||||    
T  13864355 tcagttggtatgaacaatacataatatatgcaaggtccggggttc 13864399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 32675356 - 32675296
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggtcgggggttcgaa 444  Q
    |||||| |||||||||||||| |  ||||||  |||||||||||||||||  |||||||||    
T  32675356 ttgtgagcttagttcagttggcaagaacaatgcataatatatgcaaggtctagggttcgaa 32675296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 33645739 - 33645699
Alignment:
Q  397 tcagttggtataaacaatctataatatatgcaaggtcgggg 437  Q
    |||||||||||  ||||| ||||||||||||||||||||||    
T  33645739 tcagttggtatggacaatgtataatatatgcaaggtcgggg 33645699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 444
Target Start/End: Original strand, 37147000 - 37147048
Alignment:
Q  397 tcagttggtataaacaatctataa-tatatgcaaggtcgggggttcgaa 444  Q
    ||||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  37147000 tcagttgatataaacaatgtataaatatatgcaaggtcgcgggttcgaa 37147048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 37791226 - 37791178
Alignment:
Q  384 ttgtgaacttagttcagttggtataaacaatctataatatatgcaaggt 432  Q
    |||||| |||||||||||||||| ||||||   ||||||||||||||||    
T  37791226 ttgtgagcttagttcagttggtagaaacaacgcataatatatgcaaggt 37791178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 43359134 - 43359090
Alignment:
Q  386 gtgaacttagttcagttggtataaacaatctataatatatgcaag 430  Q
    |||||||||||| |||||||| ||||||| |||||||||| ||||    
T  43359134 gtgaacttagtttagttggtagaaacaatgtataatatatacaag 43359090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University