View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14381_high_13 (Length: 323)

Name: NF14381_high_13
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14381_high_13
NF14381_high_13
[»] chr4 (14 HSPs)
chr4 (11-323)||(3800582-3800894)
chr4 (11-323)||(4001288-4001612)
chr4 (11-298)||(4009029-4009302)
chr4 (117-277)||(4217668-4217829)
chr4 (19-293)||(3956314-3956574)
chr4 (115-298)||(3986016-3986199)
chr4 (11-303)||(4024247-4024538)
chr4 (163-292)||(3920704-3920833)
chr4 (163-276)||(3933925-3934038)
chr4 (32-101)||(3816815-3816884)
chr4 (11-208)||(3809124-3809319)
chr4 (32-120)||(3933804-3933892)
chr4 (69-120)||(3920620-3920671)
chr4 (239-292)||(3809046-3809099)
[»] chr5 (1 HSPs)
chr5 (11-323)||(13396956-13397253)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 3800894 - 3800582
Alignment:
Q  11 aagaatatagtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800894 aagaatatagtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatt 3800795  T
Q  111 tcagataacatatgttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3800794 tcagataacatatgttattttggttaaaaatatggctttcaatgattgaaatttttcttttacgttaatggtagggtactgatgctattagaagcatacg 3800695  T
Q  211 tgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacgatttg 310  Q
    |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3800694 tgtagacttgtcatcatttaggaagctgaagttaagccctcatgtatttgctaagatgaccaacttgcgatatttggattttcatggtaaatacgatttg 3800595  T
Q  311 gaacttcttcctc 323  Q
    |||||||||||||    
T  3800594 gaacttcttcctc 3800582  T

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Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 4001612 - 4001288
Alignment:
Q  11 aagaatatagtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatt-tggctat 109  Q
    |||||| ||||||||||||||| ||| | ||||  |||||||||||||||   || |   |||||||||||||||||||||||||||||||  ||||  |    
T  4001612 aagaatctagtgaagaccctagtaaacgaagtcggttatgggatcctgatgacatttgctatgtattgaaaaatgacaaggtaaaaaatataatggcgtt 4001513  T
Q  110 ttcagata----------acatatgttattttggttaaaaatatggctttcaatgatt-gaaatttttcttttacattaatggtagggtactgatgctat 198  Q
    || ||| |          |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  4001512 tttagaaactttttagaaacatatgtcattttggttaaaaatatggctttcaatgatttgtaatttttcttttacattaatggtagggtactgatgctat 4001413  T
Q  199 tagaagcatacgtgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggt 298  Q
    |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  4001412 tagaagcatacgtgtagacttgtcatcatttaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggatttcattggt 4001313  T
Q  299 aaatacgatttggaacttcttcctc 323  Q
    |||||||||||||||||||||||||    
T  4001312 aaatacgatttggaacttcttcctc 4001288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 4009302 - 4009029
Alignment:
Q  11 aagaatatagtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatt 110  Q
    |||||| ||||||||| |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||    
T  4009302 aagaatctagtgaagatcctataaaatgcagtcaactatgggatcctgatattatctatgatgtattgaaaaacgacaaggtaaaatatatttggcaatt 4009203  T
Q  111 tcagataacatatgttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacg 210  Q
    | ||||||||| ||| |||||||| |||| |||            ||||   ||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  4009202 ttagataacatttgtcattttggtaaaaagtatt-----------ttga---ttttcttttacattaatggcagggcactgatgttattagaagcatacg 4009117  T
Q  211 tgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggt 298  Q
    ||||||||||||| |  | ||| || || ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  4009116 tgtagacttgtcagcgatcaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgctatttttggattttcatggt 4009029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 4217829 - 4217668
Alignment:
Q  117 aacatatgttattttggttaaaaatatggctttcaatgatt-gaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtag 215  Q
    ||||||||| |||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4217829 aacatatgtcattttggttacaaatttggctttcaatgatttgtaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtaa 4217730  T
Q  216 acttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctg 277  Q
    ||||||||||| || ||  | || ||||||||||||||||||||||||||||||||||||||    
T  4217729 acttgtcatcagtttggatgctgaagttaagccctcatgtatttgctaagatgaccaacctg 4217668  T

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Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 3956314 - 3956574
Alignment:
Q  19 agtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataa 118  Q
    |||||||||||||||||||||||||  ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  3956314 agtgaagaccctagaaaatgcagtcgattatccaatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggcaattttagataa 3956413  T
Q  119 catatgttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagact 218  Q
    ||| |||  || |||| ||||||||   ||| |           ||||||||||||||||||  |||||||||||||||||||||||||| || ||||||    
T  3956414 catttgtctttctggtgaaaaatat---tttga-----------ttttcttttacattaatgacagggtactgatgctattagaagcataagtctagact 3956499  T
Q  219 tgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttc 293  Q
    ||||| ||  |||| |  || ||||||||||  ||||||||| |||||||||||||||||  | |||||||||||    
T  3956500 tgtcagcaagtaggaaactgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttc 3956574  T

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Target: chr4; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 115 - 298
Target Start/End: Complemental strand, 3986199 - 3986016
Alignment:
Q  115 ataacatatgttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgta 214  Q
    ||||||| ||||||||||||| ||||| || |||||||||||| | | ||||||||| |||| |||  |||||||||||||||||||||||||| || ||    
T  3986199 ataacatttgttattttggtttaaaatgtgtctttcaatgatttagaattttcttttccattcatgacagggtactgatgctattagaagcatatgtcta 3986100  T
Q  215 gacttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggt 298  Q
     |||||||| || ||||| || || ||||||||||| ||||||||||||||||||| ||||||  || |||||||||| |||||    
T  3986099 aacttgtcagcaattaggaagctgaagttaagccctgatgtatttgctaagatgacgaacctgaaatttttggatttttatggt 3986016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 4024538 - 4024247
Alignment:
Q  11 aagaatatagtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatt 110  Q
    |||||| ||||| ||||||||||||| ||||||  |||||||||| ||||   || | |||||||||| |||||||||||||||| |  ||  |  | ||    
T  4024538 aagaatctagtgcagaccctagaaaacgcagtcgattatgggatcatgatgacatttgtgatgtattggaaaatgacaaggtaaacataatacgtatttt 4024439  T
Q  111 tcagataacatatgttattttggttaaaaatatggctttcaatgattg-aaatttttcttttacattaatggtagggtactgatgctattagaagcatac 209  Q
    | |||  || | ||| ||||||| |||||||| |||||| | | |||  |||||||||| ||||||| |||  |||||||||||| |||||||||||||     
T  4024438 t-agacgacgtttgtcattttggctaaaaatacggctttaactaattttaaatttttctcttacattcatgc-agggtactgatgttattagaagcataa 4024341  T
Q  210 gtgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaata 303  Q
    ||||||||||||||  |   ||  || ||  ||||||| |||||| ||||||||||||||||||||||| || ||||||||||| |||| ||||    
T  4024340 gtgtagacttgtcaggaagaagaaagctgatgttaagctctcatgcatttgctaagatgaccaacctgcaatttttggattttcgtggtgaata 4024247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 3920704 - 3920833
Alignment:
Q  163 ttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgct 262  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||| | |  |  |||| || |  ||||||||||||||||||||| |    
T  3920704 ttttcttttacattaatggcagggttctgatgctatcagaagcatacgtgtaaacttcttagaaaataggaagctaaagttaagccctcatgtatttgat 3920803  T
Q  263 aagatgaccaacctgcgatatttggatttt 292  Q
    |||||||||||||| | || ||||||||||    
T  3920804 aagatgaccaacctccaatttttggatttt 3920833  T

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Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 3933925 - 3934038
Alignment:
Q  163 ttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgct 262  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| | |  |  |||| || |  ||||||||||||||||||||| |    
T  3933925 ttttcttttacattaatggcagggttctgatgctatcagaagcatacgtgtagacttcttagaaaataggaagctaaagttaagccctcatgtatttgat 3934024  T
Q  263 aagatgaccaacct 276  Q
    ||||||||||||||    
T  3934025 aagatgaccaacct 3934038  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 3816884 - 3816815
Alignment:
Q  32 gaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatat 101  Q
    ||||| ||||||  |||||| ||||||||   || |||||||||||||||||||||||||||||||||||    
T  3816884 gaaaacgcagtcgattatggaatcctgatgaaatttatgatgtattgaaaaatgacaaggtaaaaaatat 3816815  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 3809319 - 3809124
Alignment:
Q  11 aagaatatagtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatt 110  Q
    |||||| ||| ||| |||||  |||| ||||||  |||||| ||||||||   || ||||||||||||||||||||||||||||||| ||  || |  ||    
T  3809319 aagaatctagagaacaccctgaaaaacgcagtcgattatggaatcctgatgaaatttatgatgtattgaaaaatgacaaggtaaaaagta--tgtcattt 3809222  T
Q  111 tcagataacatatgttattttggttaaaaatatggctttcaatgattgaaat-ttttcttttacattaatggtagggtactgatgctattagaagcata 208  Q
    | ||||||||| ||| || || ||||||||  || ||||||| ||||  ||| |||| |||||| || |||  ||||||||||| |||| |||||||||    
T  3809221 ttagataacatttgtcatgtt-gttaaaaaggtgcctttcaaagattttaatgttttattttactttcatgacagggtactgattctataagaagcata 3809124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 3933804 - 3933892
Alignment:
Q  32 gaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataaca 120  Q
    ||||||||||||  |||||||||  ||||   || | ||||||||||||||||||||||||||| | ||| ||||  ||||||||||||    
T  3933804 gaaaatgcagtcgattatgggatgttgatgacatttttgatgtattgaaaaatgacaaggtaaacattatatggcattttcagataaca 3933892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 3920620 - 3920671
Alignment:
Q  69 tgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataaca 120  Q
    ||||||||||||||||||||||||||| | ||| ||||  ||||||||||||    
T  3920620 tgatgtattgaaaaatgacaaggtaaacattatatggcattttcagataaca 3920671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 3809099 - 3809046
Alignment:
Q  239 gagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggatttt 292  Q
    ||||||||||||| |||||||| |||||||||||| || |||| |||| |||||    
T  3809099 gagttaagccctcgtgtatttgataagatgaccaaacttcgatttttgtatttt 3809046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 13397253 - 13396956
Alignment:
Q  11 aagaatatagtgaagaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatt 110  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||    
T  13397253 aagaatctagtgaagaccctagaaaatgcagtcgattatgggatcctgatattatctacgatgtattgaaaaatgacaaggtaaaaaa-atttggcaatt 13397155  T
Q  111 tcagataacatatgttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacg 210  Q
    | ||||||||| ||| |||||||| ||||||||   ||| |           |||||||||| | |||||  |||||||||||||||||||||||||| |    
T  13397154 ttagataacatttgtcattttggtaaaaaatat---tttga-----------ttttcttttataataatgacagggtactgatgctattagaagcataag 13397069  T
Q  211 tgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacgatttg 310  Q
    ||||||||||||| || ||||| || || |||||||||| | |||||||| ||||||||||||||||  || |||| ||||||||| || | ||| ||||    
T  13397068 tgtagacttgtcagcaattaggaagctgaagttaagcccgcctgtatttgataagatgaccaacctgaaatttttgtattttcatgatatagacggtttg 13396969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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