View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14381_high_14 (Length: 310)
Name: NF14381_high_14
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 33393517 - 33393633
Alignment:
| Q |
15 |
gagatgaatctactaactttttgcttactatcaatacaaatcaaatgtggtgacttacctaataaagagaaacatttttaagacaaaattgaaagtgcaa |
114 |
Q |
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| T |
33393517 |
gagatgaatctactaactttttgcttactatcaatacaaatcaaatgtgttgacttacctaataaagagaaacatttttaagataaaattgaaagtgcaa |
33393616 |
T |
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| Q |
115 |
atgcatcattatgaaaa |
131 |
Q |
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| T |
33393617 |
atgcatcattatgaaaa |
33393633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 157 - 310
Target Start/End: Original strand, 33393840 - 33393992
Alignment:
| Q |
157 |
tggaacggcttaatatttcttttctttaaacagtggacattattaattagttgttaggttnnnnnnnnntctcattcgtttaaatttgaattctctattg |
256 |
Q |
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| T |
33393840 |
tggaacggcttaatatttcttttctttaaacagtggacattattaattagttgttaggttaaaaaaaa-tctcattagtttaaatttgaattctctattg |
33393938 |
T |
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| Q |
257 |
acatcacgcctggaatggaaccagcctccaattctccgtacataatgtctccac |
310 |
Q |
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| T |
33393939 |
acatcacgcctggaacggaacccgcctccaattctccgtacagaatgtctccac |
33393992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 33393742 - 33393776
Alignment:
| Q |
123 |
ttatgaaaaattaatatcccaaccatgccaagcat |
157 |
Q |
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| T |
33393742 |
ttatgaaaaattaatatcccaactatgccaagcat |
33393776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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