View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14381_high_15 (Length: 307)
Name: NF14381_high_15
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 38813457 - 38813176
Alignment:
| Q |
12 |
ataggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggta |
111 |
Q |
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| T |
38813457 |
ataggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggta |
38813358 |
T |
|
| Q |
112 |
ttacaaaaggggttacttcttgaaggccgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtggtgtt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38813357 |
ttacaaaaggggttacttcttgaaggccgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtt |
38813258 |
T |
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| Q |
212 |
tcgtttgttttggataaagacacaaattttgcattgttggctcgagattactatgggtgtgaagaaaactgcatctacttct |
293 |
Q |
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| T |
38813257 |
tcgtttgttttggataaagacacaaattttgcattgttggctcgagattactatgggtgtgaagaaaactgcatctacttct |
38813176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 50 - 284
Target Start/End: Complemental strand, 38825320 - 38825084
Alignment:
| Q |
50 |
caattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtattacaaaaggggttacttcttgaaggccgtttttgtgg |
149 |
Q |
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| T |
38825320 |
caattagtagagtttgatggaaatctctgtgtggttgatatgtatattgacgatgaaaggttttacaaattgggtcacttcttgaaggctattcgtgtga |
38825221 |
T |
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| Q |
150 |
aagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtg--gtgtttcgtttgttttggataaagacacaaattttgcattg |
247 |
Q |
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| T |
38825220 |
aagtatataagcttgatcaagaatggggtaaatggttatatgtaaaagatttgggtgatatgtttcgtttgttttgggtaaagactcaaactttgcattg |
38825121 |
T |
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| Q |
248 |
ttggctcgagattactatgggtgtgaagaaaactgca |
284 |
Q |
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| T |
38825120 |
ttggctcgagattattacggatgtgaaggaaattgca |
38825084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 38810770 - 38810670
Alignment:
| Q |
14 |
aggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtatt |
113 |
Q |
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| T |
38810770 |
aggcatataagggtgaactgtgatacaaaaaacaagaaattagtagagtacaatgaaagtctttatgtggttgatttgtatattaatgatgaaaggtatt |
38810671 |
T |
|
| Q |
114 |
a |
114 |
Q |
| |
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| |
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| T |
38810670 |
a |
38810670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 35520911 - 35521189
Alignment:
| Q |
15 |
ggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtatta |
114 |
Q |
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||||||||||||||||| || | |||||||||| |||||||||||||||||||| |||| ||||||||||| | ||||| ||||||||||| ||||| |
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| T |
35520911 |
ggcatataagggtgaatgcttgcgaaaacaagaagaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatatta |
35521010 |
T |
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| Q |
115 |
caaaaggggttacttcttgaaggccgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtggtgtttcg |
214 |
Q |
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|||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35521011 |
caaatggggttactatttgaaggatgtttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttca |
35521110 |
T |
|
| Q |
215 |
tttgttttggataaagacacaaattttgcattgttggctcgagattactatgggtgtgaagaaaactgcatctacttct |
293 |
Q |
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||||||||| ||||||| |||| ||||||||||| |||| |||||| ||||| | ||||| ||| |||||||| |||| |
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| T |
35521111 |
tttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcatctatttct |
35521189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 35548713 - 35548574
Alignment:
| Q |
44 |
aagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtattacaaaaggggttacttcttgaaggccgttt |
143 |
Q |
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|||||||| |||||||| ||||||||| ||| |||||||||||||| ||||| |||||| |||| ||| | || | || || | |||| |||| |
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| T |
35548713 |
aagaagcagttagtagaatatgatggaaatctctatgtggttgatttgtatattaatgataaaagctatcataa---gcaatatttatacaaggttgttt |
35548617 |
T |
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| Q |
144 |
ttgtggaagtttataagcttgatcaagaatggggtaaatggtt |
186 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||||| |
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| T |
35548616 |
ttgtgaaaatttataagcttgatcaagaatggggtaaatggtt |
35548574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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