View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14381_high_19 (Length: 246)
Name: NF14381_high_19
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 41222234 - 41222462
Alignment:
| Q |
1 |
tgttccaatttttcttttctttcgacagtcctaatattcgattgtttagnnnnnnnnnctccaagtgtcctaactcctaactattcgttaataatagcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41222234 |
tgttccaatttttcttttctttcaacagtcctaatattcgattgtttagtttttttt-ctccaagtgtcctaactcctaactattcgttaataatagcaa |
41222332 |
T |
|
| Q |
101 |
attgaaacaagtggggtcacaaagaatcagttcagatcgaaaaagtacaatttgggttttgaaaatataggtcctattcggtttgaaaccacataaccta |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41222333 |
attgaaacaagtggggtcacagagaatcagttcagatcgaaaaagtacaatttgggttttgaaaatatagttcctattcggtttgaaaccacataaccta |
41222432 |
T |
|
| Q |
201 |
caccaaacctcaatatcaatttggacaatc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41222433 |
caccaaacctcaatatcaatttggacaatc |
41222462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University