View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14381_high_2 (Length: 534)
Name: NF14381_high_2
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 11592958 - 11593291
Alignment:
| Q |
20 |
gcattaggagtatgaagattataatgtgatgaagatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
11592958 |
gcattaggagtatgaagattataatgtgatgaagatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctt |
11593057 |
T |
|
| Q |
120 |
tggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11593058 |
tggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatc |
11593157 |
T |
|
| Q |
220 |
ttgatcatattcaacaacaacaactttgtgtccttctttgacgattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11593158 |
ttgatcatattcaacaacaacaactttgtgaccttctttgacaattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaa |
11593257 |
T |
|
| Q |
320 |
gttatgaacaaactcaaagctaaaaggttcatca |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11593258 |
gttatgaacaaactcaaagctaaaaggttcatca |
11593291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 11645161 - 11644828
Alignment:
| Q |
20 |
gcattaggagtatgaagattataatgtgatgaagatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
11645161 |
gcattaggagtatgaagattataatgtgatgaagatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctt |
11645062 |
T |
|
| Q |
120 |
tggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645061 |
tggtgttttctatgaaaccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatc |
11644962 |
T |
|
| Q |
220 |
ttgatcatattcaacaacaacaactttgtgtccttctttgacgattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11644961 |
ttgatcatattcaacaacaacaactttgtgaccttctttgacaattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaa |
11644862 |
T |
|
| Q |
320 |
gttatgaacaaactcaaagctaaaaggttcatca |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11644861 |
gttatgaacaaactcaaagctaaaaggttcatca |
11644828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 442 - 527
Target Start/End: Complemental strand, 11644739 - 11644654
Alignment:
| Q |
442 |
aggattgtgttgtggtaagaatgaagagtgtaacaacgttgtttgtgttgtgccgagttgttcggttttagttgttgagtcctatg |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
11644739 |
aggattgtgttgtggtaagaatgaagagtgtaacaaagttgtttgtgttgtgccgagttgttcggttttatttgttgagttctatg |
11644654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 527
Target Start/End: Original strand, 11593404 - 11593469
Alignment:
| Q |
458 |
aagaatgaagagtgtaacaacgttgtttgtgttgtgccgagttgttcggttttagttgttgagtcctatg |
527 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||| ||||| |
|
|
| T |
11593404 |
aagaatgatgagtgtaacaa---tgtttgtgttgtgccgaattgtttggtttta-ttgttgagttctatg |
11593469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 34705153 - 34705219
Alignment:
| Q |
287 |
tttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca |
353 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
34705153 |
tttggagagaaaatgcttgctgctgtgagtgaagttactaacaggctcaaagctaaaatgttcatca |
34705219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 31069361 - 31069243
Alignment:
| Q |
52 |
agatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttg |
151 |
Q |
| |
|
||||| ||| ||||| ||||||||||| || ||||| ||||| |||||| |||||| ||| | |||| ||||||||||||||||| ||||| || ||| |
|
|
| T |
31069361 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
31069263 |
T |
|
| Q |
152 |
gtgtaatcttgttgatgggt |
171 |
Q |
| |
|
||| |||| | ||||||||| |
|
|
| T |
31069262 |
gtgaaatcatcttgatgggt |
31069243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 39126987 - 39126935
Alignment:
| Q |
185 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
238 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||| || |||||||||||| |
|
|
| T |
39126987 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
39126935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University