View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14381_high_6 (Length: 412)
Name: NF14381_high_6
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 34980362 - 34980721
Alignment:
| Q |
18 |
cactgatcaacaataaaatcattgatcgtgcacgttcaactatgaaggaactgtacaagatacatttgcagaaaacaatcctgtatggcatcaacataag |
117 |
Q |
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| T |
34980362 |
cactgattaacaataaaatcattgatcgtgcacgttcaactatgaaggaactgtacaagatacatttgcagaaaacaatcctgtatggcatcaacataag |
34980461 |
T |
|
| Q |
118 |
gaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980462 |
gaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggag |
34980561 |
T |
|
| Q |
218 |
atcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcggga |
317 |
Q |
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| T |
34980562 |
atcttgaaactatacctagttttgatttgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaaggttttccgattgaagcttctcggga |
34980661 |
T |
|
| Q |
318 |
catggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34980662 |
catggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
34980721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 25 - 369
Target Start/End: Original strand, 34992770 - 34993115
Alignment:
| Q |
25 |
caacaataaaatcattgatcgtgcacgttcaactatgaaggaactgtacaagatac-atttgcagaaaacaatcctgtatggcatcaacataaggaacat |
123 |
Q |
| |
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||||| ||||||||||||| ||||||||||| ||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992770 |
caacattaaaatcattgattgtgcacgttcagctatgaacgaactgtgcaagataggacttgcagaaaacaatcctgtatggcatcaacataaggaacat |
34992869 |
T |
|
| Q |
124 |
aggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttg |
223 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
34992870 |
aggtacgaaattctcgataatattgaatatttgaaacaatttagtcaggttgatgcatcattaatggagcttgttaagatggttgaagttggagatcttc |
34992969 |
T |
|
| Q |
224 |
aaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatgga |
323 |
Q |
| |
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|||| | |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||| | |||||||| ||| ||||| |||| |
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| T |
34992970 |
aaacactgcctagttttgattcgtgtcgaatccaagatccaatgtcaacaaaggacgtttttggacaaggtttgcagattgaaggttcacgggatatggc |
34993069 |
T |
|
| Q |
324 |
attgattaagataagaccaactaaactagttgaattacttatggat |
369 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
34993070 |
attgattaagataagtccaactaaactagttgaagtacttatggat |
34993115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 29 - 373
Target Start/End: Original strand, 34984822 - 34985164
Alignment:
| Q |
29 |
aataaaatcattgatcgtgcacgttcaactatgaaggaactgtacaagatac-atttgcagaaaacaatcctgtatggcatcaacataaggaacataggt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| ||| ||| | |||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
34984822 |
aataaaatcattgatcgtgcacgttcagctatgaacgaactgtgcaaaataggaattgcagaaaacaat---gtatggcatcaacatagggaacataggt |
34984918 |
T |
|
| Q |
128 |
acgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaac |
227 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||| | ||||||||| | ||| | | ||||||||| |||||||||||||||| ||| |||| |
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|
| T |
34984919 |
acgaaattctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaac |
34985018 |
T |
|
| Q |
228 |
tatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattg |
327 |
Q |
| |
|
| ||||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||| |||||||| | |||||||||||||||||||| || |||| |
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|
| T |
34985019 |
tttacctagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaaggtttgcagattgaagcttctcgggacaaggcattg |
34985118 |
T |
|
| Q |
328 |
attaagataagaccaactaaactagttgaattacttatggatgtgg |
373 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
34985119 |
attaagataagtccaactaaactagttgaattacttatggatgtgg |
34985164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 27543559 - 27543854
Alignment:
| Q |
23 |
atcaacaataaaatcattgatcgtgcacgttcaactatgaaggaactgtacaagatac-atttgcagaaaacaatcctgtatggcatcaacataaggaac |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||| ||||||| ||| ||| |||||||||||||||| ||||| |||||||||||||||| |
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| T |
27543559 |
atcaacaataaaatcattgatcctgcacgttcagctatgaaagaactgtgcaaaataggatttgcagaaaacaat---gtatgacatcaacataaggaac |
27543655 |
T |
|
| Q |
122 |
ataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatct |
221 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||| | ||||| | ||||||| | || ||| ||||||||| || |
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|
| T |
27543656 |
ataggtacgaaattctcgatgatattgaatatttgaaacaatttggttgggttgatgcaacattaatggagattgttaggttgcttggagttggagagct |
27543755 |
T |
|
| Q |
222 |
tgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
320 |
Q |
| |
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| ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| || ||||| | |||||||||||||| |||||| |
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| T |
27543756 |
tcaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagcttctcaggacat |
27543854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 29 - 373
Target Start/End: Complemental strand, 27542826 - 27542482
Alignment:
| Q |
29 |
aataaaatcattgatcgtgcacgttcaactatgaaggaactgtacaagatac-atttgcagaaaacaatcctgtatggcatcaacataaggaacataggt |
127 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||| ||||| | ||| ||| | || ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
27542826 |
aataaaatcattgatcatgcacgtttagttatgaacgaactatgcaaaatatgacttccagaaaacaatt---tatggcatcaacataaggaacataggt |
27542730 |
T |
|
| Q |
128 |
acgaaattcttgat--tatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaa |
225 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||||||| | ||| |||||||||| | ||||| | ||| || | |||||||||||||||| || || |
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|
| T |
27542729 |
acgaaattctcgatgatatattgaaaatttgaaacaatatggtcgggttgatgcaacattaatggagattaataggttggttgaagttggagaattttaa |
27542630 |
T |
|
| Q |
226 |
actatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaat |
325 |
Q |
| |
|
||| ||||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||| |||||||| | ||||||||||| |||| |||||| || |
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|
| T |
27542629 |
actttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgcagattgaagcttttcggaacatggcat |
27542530 |
T |
|
| Q |
326 |
tgattaagataagaccaactaaactagttgaattacttatggatgtgg |
373 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
27542529 |
tgattaagataagtccaactaaactagttgaaatacttatggatgtgg |
27542482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 27582883 - 27583233
Alignment:
| Q |
22 |
gatcaacaataaaatcattgatcgtgcacgttcaactatgaaggaactgtacaagatacat-ttgcagaaaacaatcctgtatggcatcaacataaggaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | ||||||| ||| || | |||||||| | | |||||||||||||||||||||| |
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|
| T |
27582883 |
gatcaacaataaaatcattgatcgtgcacgttcagctatgtaagaactgtgcaaaattgaacttgcagaagaaa----tgtatggcatcaacataaggaa |
27582978 |
T |
|
| Q |
121 |
cataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatc |
220 |
Q |
| |
|
|||| |||||||||||| ||| ||||| ||||||||||||||||| ||| |||||||||| | | ||| | ||||||| | |||||| ||||||||| | |
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|
| T |
27582979 |
cataagtacgaaattctcgataatatttaatatttgaaacaatttggtcgggttgatgcaacatcaatggagattgttaggttggttggagttggagagc |
27583078 |
T |
|
| Q |
221 |
ttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
320 |
Q |
| |
|
|| ||||| ||||||||||| ||| ||||||||| ||||||||||||| |||| |||| ||||||| |||||||| ||||||||||||||| ||||| |
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|
| T |
27583079 |
ttcaaactttacctagttttaatttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgttgattgaagcttctcgagacat |
27583178 |
T |
|
| Q |
321 |
ggaa--ttgattaagataagaccaactaaactagttgaattacttatggatgtgg |
373 |
Q |
| |
|
|| | |||||||| ||| | |||||||||||| |||||||||||||||||||| |
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|
| T |
27583179 |
ggcatgttgattaatatatgttcaactaaactagatgaattacttatggatgtgg |
27583233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 99 - 373
Target Start/End: Complemental strand, 27581647 - 27581375
Alignment:
| Q |
99 |
tgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgtt |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||| ||| |||||||||| | ||||| | ||| || |
|
|
| T |
27581647 |
tgtatggcatcaacataaggacaataggtacaaaattctccatgatattgaatatttgaaacaatttggtcgggttgatgcaacattaatggagattatt |
27581548 |
T |
|
| Q |
199 |
aagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttc |
298 |
Q |
| |
|
| | |||||||||||||||| ||| ||||| ||||||||||||||| ||| ||||||||||||||||| |||| |||||||| ||| |||||||| |
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|
| T |
27581547 |
aggttggttgaagttggagagcttcaaactttacctagttttgatt--tgtgaaaatcaaaatccaatgtacacaatggaagtttctggacaaggtttat |
27581450 |
T |
|
| Q |
299 |
cgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
373 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27581449 |
agattgaagcctcgtgggacatggcattggttaagataattccaactaaactagttgaattacttatggatgtgg |
27581375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 373
Target Start/End: Original strand, 27543859 - 27543892
Alignment:
| Q |
340 |
ccaactaaactagttgaattacttatggatgtgg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27543859 |
ccaactaaactagttgaattacttatggatgtgg |
27543892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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