View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14381_high_7 (Length: 407)
Name: NF14381_high_7
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Original strand, 14944733 - 14945116
Alignment:
| Q |
13 |
aatatggcaacatcttttccctccgattcggttcacgccttgtaatcgtgagttcatcacaatctgcatttcaagaatgctttaccaaaaacgatgttgt |
112 |
Q |
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| T |
14944733 |
aatacggcaacatcttttccctccgattcggttcgcgccttgtaatcgtgagttcatcacaatctgcatttcaagaatgctttaccaaaaacgatgttgt |
14944832 |
T |
|
| Q |
113 |
attagccaatcgaccgtataatatcgctggcaagtacatcttctacaactgtaccaccataggatcatgttcctatggtgatcagtggatcaacctccgt |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
14944833 |
attagccaatcgaccgtataatattgctggcaagtacatcttctacaactgtaccaccataggatcatgctcctatggtgatcactggatcaacctccgt |
14944932 |
T |
|
| Q |
213 |
cgaataagtactcaagatcttctttcgatacaacaagtacactccttttcggggattcgaagagatgagaccaatagggtgattcatcaattggtcaagg |
312 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14944933 |
cgaataagtactcaagatcttctttcgatacaacgagtacactccttttcggggattcgaagagatgagaccaatagggtgattcatcaattggtcaagg |
14945032 |
T |
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| Q |
313 |
aatgctcgtgcttgaaatttgaacaagtggagctaagttctatgcttcata--atgatgtacaacaacttgatgaggatgatat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14945033 |
aatgctcgtgcttgaaatttgaacaagtggagctaagttttatgcttcataacatgatgtacaacaacttgatgaggatgatat |
14945116 |
T |
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