View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14381_low_11 (Length: 353)
Name: NF14381_low_11
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 4 - 338
Target Start/End: Complemental strand, 26621561 - 26621227
Alignment:
| Q |
4 |
gcattagcatagagtagcataactttatattttctattgtgttcactcggcattcagcaaggttatcagaagttagtttcatagattagttagagtttgt |
103 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621561 |
gcattagcatagagtagcataactttatcttttctattgtgttgactcgacattcagcaaggttatcagaagttagtttcatagattagttagagtttgt |
26621462 |
T |
|
| Q |
104 |
tagactcgagctataaatatctccttgatcttcagtgtgagttactgcctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621461 |
tagactcgagctataaatatctccttgatcttcagtgtgagttactacctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaac |
26621362 |
T |
|
| Q |
204 |
tttcagaagaacttgaatcttaccttcttacacttgtttgtggatgtccaatgtgtagtgtttgtgctgctctgagaccgcatcaattaggtgaacgatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||| |||| |
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| T |
26621361 |
tttcagaagaacttgaatcttaccttcttacactagtttgtggatgtccaatgtgtagcgtttgtgctgctctgcgaccgcgtcaatgaggtgaatgatt |
26621262 |
T |
|
| Q |
304 |
gctgcttccctagtctgaatcatctggaggtttgt |
338 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
26621261 |
gctgcttccctagtctgaatcatctggaggtttgt |
26621227 |
T |
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