View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14381_low_20 (Length: 261)

Name: NF14381_low_20
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14381_low_20
NF14381_low_20
[»] chr4 (15 HSPs)
chr4 (19-253)||(4217267-4217500)
chr4 (19-207)||(3800295-3800484)
chr4 (165-240)||(3985781-3985856)
chr4 (165-251)||(3816390-3816476)
chr4 (20-120)||(3956829-3956929)
chr4 (165-251)||(3808814-3808900)
chr4 (165-242)||(3920994-3921066)
chr4 (165-242)||(3934215-3934287)
chr4 (166-251)||(4001088-4001173)
chr4 (165-242)||(3956728-3956805)
chr4 (167-246)||(4008796-4008875)
chr4 (38-113)||(4023850-4023925)
chr4 (205-251)||(4024021-4024067)
chr4 (39-119)||(3985652-3985732)
chr4 (39-119)||(3816260-3816340)
[»] chr5 (2 HSPs)
chr5 (139-240)||(13396732-13396830)
chr5 (42-113)||(13396628-13396699)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 4217267 - 4217500
Alignment:
Q  19 gcaatacattcagattttcagcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatccggcta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4217267 gcaatacattcagattttcagcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtttaacttcttttaaattaactagatccggcta 4217366  T
Q  119 cacnnnnnnnnnngtgatatatataagcttaagtacttaatttacaataattccttgaattaagataaatttaatctgaaagacacatattcaattacct 218  Q
    |||          |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4217367 cacaaaaaaaaa-gtgatatatataagcttaagtagttaatttacaataattccttgaattaagataaatttcatctgaaagacacatattcaattacct 4217465  T
Q  219 gaactccacaccaaagcttttccacttgactataa 253  Q
    | ||||||||||||||||||||||||| |||||||    
T  4217466 gtactccacaccaaagcttttccactttactataa 4217500  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 3800295 - 3800484
Alignment:
Q  19 gcaatacattcagattttcagcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatccggcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800295 gcaatacattcagattttcagcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatccggcta 3800394  T
Q  119 cac-nnnnnnnnnngtgatatatataagcttaagtacttaatttacaataattccttgaattaagataaatttaatctgaaagacacata 207  Q
    |||           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800395 cacaaaaaaaaaaggtgatgtatataagcttaagtagttaatttacaataattccttgaattaagataaatttaatctgaaagacacata 3800484  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 3985781 - 3985856
Alignment:
Q  165 ataattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttc 240  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  3985781 ataattccttgaattttgataaatttaatctgatagacacatattcaattacctgtactccacaccaaagcttttc 3985856  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 3816390 - 3816476
Alignment:
Q  165 ataattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttccacttgactat 251  Q
    ||||||||||||||||||||||||||||| || |||| | |||| |||||||||| |||||||||||||||||||||||| ||||||    
T  3816390 ataattccttgaattaagataaatttaatttggaagataaatatccaattacctgcactccacaccaaagcttttccactagactat 3816476  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 3956929 - 3956829
Alignment:
Q  20 caatacattcagattttcagcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatccggctac 119  Q
    ||||||||| ||||||   |||||||||||||  |||| | |||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  3956929 caatacattaagatttgtggcttttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctac 3956830  T
Q  120 a 120  Q
    |    
T  3956829 a 3956829  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 3808814 - 3808900
Alignment:
Q  165 ataattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttccacttgactat 251  Q
    |||||||| |||||||||||||||||||| || ||||||| ||| |||||||||| ||||||| |||||||||||||| || |||||    
T  3808814 ataattccctgaattaagataaatttaatttggaagacacgtatccaattacctgcactccacgccaaagcttttccattttactat 3808900  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 3921066 - 3920994
Alignment:
Q  165 ataattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttcca 242  Q
    ||||||| |||||||||||||||||||||     ||||||||||||||||||||| ||||||||||| ||||||||||    
T  3921066 ataattcattgaattaagataaatttaat-----agacacatattcaattacctgtactccacaccatagcttttcca 3920994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 3934287 - 3934215
Alignment:
Q  165 ataattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttcca 242  Q
    ||||||| |||||||||||||||||||||     ||||||||||||||||||||| ||||||||||| ||||||||||    
T  3934287 ataattcattgaattaagataaatttaat-----agacacatattcaattacctgtactccacaccatagcttttcca 3934215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 4001088 - 4001173
Alignment:
Q  166 taattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttccacttgactat 251  Q
    |||||||||||||||| |  || | |||||| | |||||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  4001088 taattccttgaattaacaagaaataaatctggatgacacatattcaattacctgcactccacaccaaagattttccactcgactat 4001173  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 3956805 - 3956728
Alignment:
Q  165 ataattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttcca 242  Q
    ||||||| |||| ||||| ||||||||||||  ||||||| |||||||||| ||| |||||||||||||| |||||||    
T  3956805 ataattctttgatttaaggtaaatttaatctagaagacacgtattcaattatctgcactccacaccaaagtttttcca 3956728  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 4008796 - 4008875
Alignment:
Q  167 aattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttttccacttg 246  Q
    |||||||||||| |||  |||||||||| | |||| ||||| ||||||||||  |||||| ||||||||||||| |||||    
T  4008796 aattccttgaatcaagcgaaatttaatcaggaagatacatagtcaattaccttcactccataccaaagcttttctacttg 4008875  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 4023850 - 4023925
Alignment:
Q  38 agcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatcc 113  Q
    |||||||||||||| |||||||||||||| ||||   ||||  || ||| |||| |||||||||||||||||||||    
T  4023850 agcttttgaaaagtcaggtaactccttcaggaatttcgaataggagagtctaacctcttttaaattaactagatcc 4023925  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 4024021 - 4024067
Alignment:
Q  205 atattcaattacctgaactccacaccaaagcttttccacttgactat 251  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  4024021 atattcacttacctgcactccacaccaaagcttttccactagactat 4024067  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 3985652 - 3985732
Alignment:
Q  39 gcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatccggctac 119  Q
    |||||||||||||  ||||||||||||| |  | |||||   || |||||||||||||||||||||| ||||||| |||||    
T  3985652 gcttttgaaaagtctggtaactccttcaggtcttctgaaaaagagagtgtaacttcttttaaattaattagatcctgctac 3985732  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 3816260 - 3816340
Alignment:
Q  39 gcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatccggctac 119  Q
    |||||||||||||  ||||||||||| || ||   |||||  || ||| |||||||||||||||||| ||||||| |||||    
T  3816260 gcttttgaaaagtctggtaactcctttaataacattgaataagagagtctaacttcttttaaattaattagatcctgctac 3816340  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 13396732 - 13396830
Alignment:
Q  139 atataagcttaagtacttaatttacaataattccttgaattaagataaatttaatctgaaagacacatattcaattacctgaactccacaccaaagcttt 238  Q
    ||||||| ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  13396732 atataagattaagtaattaattta---taattccttgaattaagataaatttaatctgaaagacacgtattcaattacctgtactccacaccaaagcttt 13396828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 13396628 - 13396699
Alignment:
Q  42 tttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatcc 113  Q
    ||||||||||  ||||||||||||| | ||  ||||||  | |||||||||| |||||||||||||||||||    
T  13396628 tttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcc 13396699  T

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