View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14381_low_22 (Length: 245)
Name: NF14381_low_22
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 23097346 - 23097218
Alignment:
| Q |
107 |
cttcgtcttcgtcttcatcgtcctggagttattcggttccatcgcctgccgttggtgttagagttggtgctggatttgatgcatttgatgatgctggatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23097346 |
cttcgtcttcgtcttcatcgtcctggagttattcggttccatcgcctgccgttggtgttagagttggtgctggatttgatgcatttgatgatgctggatt |
23097247 |
T |
|
| Q |
207 |
tctcaccttagcggtagtgtgtttctgtg |
235 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
|
|
| T |
23097246 |
tctcaccttagcgttagtgtgtttctgtg |
23097218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 23097462 - 23097378
Alignment:
| Q |
18 |
cttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcgccg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23097462 |
cttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcgccg |
23097378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 11828252 - 11828142
Alignment:
| Q |
18 |
cttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcgccgagttcttcgtcttcg |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11828252 |
cttagcagcaccatctggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcg------tcttcgtcttcg |
11828159 |
T |
|
| Q |
118 |
tcttcatcgtcctggag |
134 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
11828158 |
tcttcatggtccaggag |
11828142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 1493714 - 1493782
Alignment:
| Q |
84 |
ttattcggctccatcgccgagttcttcgtcttcgtcttcatcgtcctggagttattcggttccatcgcc |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1493714 |
ttattcggctccatcgccgagttcttcgtcttcgtcttcatcgtcctggagttattcggttccatcgcc |
1493782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 1493840 - 1493886
Alignment:
| Q |
150 |
gcctgccgttggtgttagagttggtgctggatttgatgcatttgatg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1493840 |
gcctgccgttggtgttagagttggtgctggatttgatgcatctgatg |
1493886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 47344075 - 47344119
Alignment:
| Q |
105 |
ttcttcgtcttcgtcttcatcgtcctggagttattcggttccatc |
149 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
47344075 |
ttcttcgtcttcctcttcatcgtctaggagttattcggttccatc |
47344119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University