View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14381_low_3 (Length: 525)
Name: NF14381_low_3
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Complemental strand, 1107919 - 1107437
Alignment:
| Q |
18 |
gattcatacctcgcaagagcgtgagttcaactcctgttatatgagaagctctttggtggatagtcagttagtatgtactaaccttggtgagtcgcaacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
1107919 |
gattcatacctcgcaagagcgtgagttcaactcctgttatatgagaagctctttggtggataatcagttagtatgtactaaccttcatgagtcgcaacaa |
1107820 |
T |
|
| Q |
118 |
caactcaagaagaatatggatttcaacagagcgaaaatgtttcagcatacttcaatcatcaaagaacaaaatatcgaaaacattacttgaaatccacgtt |
217 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||| |
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| T |
1107819 |
caactcaagaagaatatggattcaaacagagcaaaaatgtttcagcatacttcaatcgtcaaataacaaaatattgaaaacattacttggaatcaacgtt |
1107720 |
T |
|
| Q |
218 |
ttcattcttcaaaactattttcnnnnnnntctcaaccctctcaccaaattcatctcttcttccacttctcaaggtcttccttcttccaacttgcttgcca |
317 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
1107719 |
ttcattcttcaaaacaat------------ctcaaccctctcaccaaattcatctcttcttccacttctcaaggtcttccttcttccaacatgctttcca |
1107632 |
T |
|
| Q |
318 |
tttcttcaaccacacgccaacccacctccgctacaactcaggagatcacggtgcaaacaacttgattggaattcagttcactgttttgatcattacgata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| |
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| T |
1107631 |
tttcttcaaccacacgccaacccacctccgctacaattcaggagatcacggtgcaaagaacttgattggaattcagttcactgtttggatcattatgata |
1107532 |
T |
|
| Q |
418 |
aaagtgtatgattgcagaagaggagttcctcttgtatgtccatgattctacccaaacagaactaatttctgtttggttatcgctctcgtaatcct |
512 |
Q |
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| T |
1107531 |
aaagtgtatgattgcagaagaggagttcctcttgtatgtccatgattctggccaaacagaactaatttctgtttggttatcgctctcgtaatcct |
1107437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 179 - 370
Target Start/End: Complemental strand, 1607019 - 1606828
Alignment:
| Q |
179 |
aagaacaaaatatcgaaaacattacttgaaatccacgttttcattcttcaaaactattttcnnnnnnntctcaaccctctcaccaaattcatctcttctt |
278 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1607019 |
aagaacaaaacatcgaaaacattacttgaaatccacgctttctttcttcaaaactattttcaaaaaaatctcaaccctctcaccaaattcatctcttctt |
1606920 |
T |
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| Q |
279 |
ccacttctcaaggtcttccttcttccaacttgcttgccatttcttcaaccacacgccaacccacctccgctacaactcaggagatcacggtg |
370 |
Q |
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| T |
1606919 |
ccacttctcaaggtcttccttcttccaacatgcttgccatttcttcaaccacatgccaacccacctccgctacaattcaggagatcacggtg |
1606828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 1607143 - 1607022
Alignment:
| Q |
18 |
gattcatacctcgcaagagcgtgagttcaactcctgttatatgagaagctctttggtggatagtcagttagtatgtactaaccttggtgagtcgcaacaa |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607143 |
gattcataccttgcaagagcgtgagttcaactcctgttatatgagaagctctttggtggatagtcagttagtatgtactaaccttggtgagtcgcaacaa |
1607044 |
T |
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| Q |
118 |
caactcaagaagaatatggatt |
139 |
Q |
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|||||||||||||||||||||| |
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| T |
1607043 |
caactcaagaagaatatggatt |
1607022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 364 - 464
Target Start/End: Complemental strand, 1606172 - 1606072
Alignment:
| Q |
364 |
cacggtgcaaacaacttgattggaattcagttcactgttttgatcattacgataaaagtgtatgattgcagaagaggagttcctcttgtatgtccatgat |
463 |
Q |
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| T |
1606172 |
cacggtgcaaacaacttgattggaattcagttcactgttttgatcattacgataaaagtgtatgattgcagaagaggagttcctcttgtatgtccatgat |
1606073 |
T |
|
| Q |
464 |
t |
464 |
Q |
| |
|
| |
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|
| T |
1606072 |
t |
1606072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 453 - 512
Target Start/End: Complemental strand, 1605883 - 1605824
Alignment:
| Q |
453 |
atgtccatgattctacccaaacagaactaatttctgtttggttatcgctctcgtaatcct |
512 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1605883 |
atgtccatgattctggccaaacagaactaatttctgtttggttatcgctctcgaaatcct |
1605824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 285
Target Start/End: Complemental strand, 378466 - 378331
Alignment:
| Q |
150 |
gaaaatgtttcagcatacttcaatcatcaaagaacaaaatatcgaaaacattacttgaaatccacgttttcattcttcaaaactattttcnnnnnnntct |
249 |
Q |
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||||||| |||| |||||||||||||||||| | ||||| | |||||||||||||||||||||| ||||||||| | |||| | ||| ||| |
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| T |
378466 |
gaaaatgcttcaacatacttcaatcatcaaaaaccaaaacttttaaaacattacttgaaatccacgctttcattctccgtaactctcttcataacaatct |
378367 |
T |
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| Q |
250 |
caaccctctcaccaaattcatctcttcttccacttc |
285 |
Q |
| |
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||| ||| |||||||||||||||||||||||||| |
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| T |
378366 |
tcaccttcttaccaaattcatctcttcttccacttc |
378331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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