View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14381_low_8 (Length: 384)
Name: NF14381_low_8
Description: NF14381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14381_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 3 - 360
Target Start/End: Complemental strand, 52376773 - 52376428
Alignment:
| Q |
3 |
aggaggagcacagacaccaacaacagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccatcaaacgaaccaagcaaaacacctgaa |
102 |
Q |
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| T |
52376773 |
aggaggagcaccgacaccaacagcagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccatcaaacgaaccaagcaaaacacctgaa |
52376674 |
T |
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| Q |
103 |
tctgcacccacaaatgcacccacagcagcatccaccaacgcgcctgcagaggcaccaaaaggcaatggcgagaatgtagccggtagttctaaagcacctg |
202 |
Q |
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| T |
52376673 |
tctgcacccacaaatgcacccacagcagcatccaccaacgcgcctgcagaggcaccaaaaggcaatggcgcgaatgtagccggtagttctaaagcacctg |
52376574 |
T |
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| Q |
203 |
gaagtgctccaattgtgtcgccagccggagcacctcaaggggatctaacagacgatgatgatgacgatgatcaaatggttgcaccttcaggtgcacctaa |
302 |
Q |
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| T |
52376573 |
aaagtgctccaattgtgtctccaaccggagcacctcaaggggatctaacagatgatgatgatgacgatgatcaaatggttgcaccttcaggtgcaccta- |
52376475 |
T |
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| Q |
303 |
aggagcacctaaagggacctctacagatgatgattgaagtatagaattgtaacatcat |
360 |
Q |
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| T |
52376474 |
-----------aagggacctctacagatgatgattgaagtatagaattgtaacatcat |
52376428 |
T |
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