View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14382_high_1 (Length: 828)
Name: NF14382_high_1
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 16 - 813
Target Start/End: Original strand, 33632648 - 33633445
Alignment:
| Q |
16 |
atctaaccaatgacacaaagcttttttatacctgtaagagtgcttgtttgttgacataaattctgactgagatgaaatttctgaaccaaagtcaatattt |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632648 |
atctaaccaattacacaaagcttttttatacctgtaagagtgcttgtttgttgacataaattctgactgagatgaaatttctgaaccaaagtcaatattt |
33632747 |
T |
|
| Q |
116 |
aaaggttctggctccttgttatcttttaggatctcctgggaaggaacacaatcataaaaaatcaacaagcaaatactatggttttataagtgaagaaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632748 |
aaaggttctggctccttgttatcttttaggatctcctgggaaggaacacaatcataaaaaatcaacaagcaaatactatggttttataagtgaagaaatt |
33632847 |
T |
|
| Q |
216 |
gcaacccctggttctatagtttttagttgtgatttattactatgataagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatg |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632848 |
gcaaccccttgttctatagtttttagttgtgatttattactatgataagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatg |
33632947 |
T |
|
| Q |
316 |
gaaacctcatagcaaacttttgaatctgccaaaaagaaaaagtagcatcgcaattatcatactatgtctgaacaaggtagtgtctgtgtgcgactaaatt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33632948 |
gaaacctcatagcaaacttttgaatctgcaaaaaagaaaaagtagcatcacaattatcatactatgtctgaacaaggtagtgtctgtgtgcaactaaatt |
33633047 |
T |
|
| Q |
416 |
tattgttcgcttaataaattaatcatgcctcaccctaacaacactgttattacgttcgctcaaaattacattaacaaatgcacgaatcaacactgtattg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633048 |
tattgttcgcttaataaattaatcatgcctcaccctaacaacactgttattacgttcgctcaaaattacattaacaaatgcacgaatcaacactgtattg |
33633147 |
T |
|
| Q |
516 |
ttaaaagtcgtgatggaatagcaattaccaaaatcaaatgcatgaacagataaagttagaaagacaaatacctaacatattgctatgaaatccaaagcaa |
615 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33633148 |
ttacaagtcgcgatggaatagcaattaccaaaatcaaatgcatgaacggataaagttagaaagacaaatacctaacatattgctatgaagtccaaagcaa |
33633247 |
T |
|
| Q |
616 |
aaaagtactctaacgaacgaattcaatggactaacttcttaagtcacgttaaaatatagtaaatatagttaagttgttcattcaaaaatatgagttgctc |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33633248 |
aaaagtactctaacgaacgaattcaatggactaacttcttaagtcacgttaaaatatagtaaatatagttaagttggtcattcaaaaatatgagttgctc |
33633347 |
T |
|
| Q |
716 |
caacacaatagaacttcttcagttaaatcagtcctcacattttagttcaaaattgcagtccacaatcccgattgttgcaactaggttttagcagtatc |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33633348 |
caacacaatagaacttcttcagttaaatcagtcctcacattttagttcaaaattgcagtccacaatcccgattgtttcaactaggttttagcagtatc |
33633445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 36 - 537
Target Start/End: Complemental strand, 29193282 - 29192793
Alignment:
| Q |
36 |
cttttttatacctgtaagagtgcttgtttgttgacataaattctgactgagatgaaatttctgaaccaaagtcaatatttaaaggttctggctccttgtt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29193282 |
cttttttatacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggttccggctccttgtc |
29193183 |
T |
|
| Q |
136 |
atcttttaggatctcctgggaaggaacacaatcataaaaaatcaacaagcaaatactatggttttataagtgaagaaattgcaacccctggttctatagt |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | || ||||||| ||||||||| |
|
|
| T |
29193182 |
atctttcaggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagt---gcaagtgcaaccgctggttcta---- |
29193090 |
T |
|
| Q |
236 |
ttttagttgtgattta--ttactatgataagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaact |
333 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29193089 |
ttttagttgtgatttattttagtatgttaagcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatggaaacctcatagcaaact |
29192990 |
T |
|
| Q |
334 |
tttgaatctgccaaaaagaaaaagtagcatcgcaattatcatactatgtctgaacaaggtagtgtctgtgtgcgactaaatttattgttcgcttaataaa |
433 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
29192989 |
tttgaatctgccaaaaag-aaaagtagcatcacaattatcataatatgtctgaataaggcagtgtctgtgtgcgactagatttattgttcacttaataaa |
29192891 |
T |
|
| Q |
434 |
ttaatcatgcctcaccctaacaacactgttattacgttcgctcaaaattacattaacaaatgcacgaatcaacactgtattgttaaaagtcgtgatggaa |
533 |
Q |
| |
|
|||| |||| || |||||| | |||||||||||| |||| ||| ||||||||||| | || ||||||||||||||||||| || || ||||||| |
|
|
| T |
29192890 |
ttaaccatgtcttaccctagcgacactgttattatgttcattca-----acattaacaaacg-acaaatcaacactgtattgttacaaatcacgatggaa |
29192797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 545 - 806
Target Start/End: Complemental strand, 29192763 - 29192508
Alignment:
| Q |
545 |
aaaatcaaatgcatgaacagataaagttagaaagacaaatacctaacatattgctatgaaatccaaagcaaaaaagtactctaacgaacgaattcaatgg |
644 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
29192763 |
aaaatcatatacatgaacagataaagttagaaaggcaattacctaacat--tgctatgaaatccactacaaaaaagtactcaaaagaacgaattcaatgg |
29192666 |
T |
|
| Q |
645 |
actaacttcttaagtcacgttaaaatatagtaaatatagttaagttgttcattcaaaaatatgagttgctccaacacaatagaacttcttcagttaaatc |
744 |
Q |
| |
|
|||||||| | ||||||| ||||||| ||||||||||| ||||| || |||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
29192665 |
actaacttttcaagtcacattaaaatctagtaaatata----agttgatccttcaaaaatatgagttgctcgaacgcaatagaactccttcagttaaatc |
29192570 |
T |
|
| Q |
745 |
agtcctcacattttagttcaaaattgcagtccacaatcccgattgttgcaactaggttttag |
806 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
29192569 |
agtcctaacattttagttcaaaattgcagtctacaatcccaattgttgcaactaggttttag |
29192508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 171 - 334
Target Start/End: Complemental strand, 29183063 - 29182893
Alignment:
| Q |
171 |
aaaaaatcaacaagcaaatactatggttttataagtgaa---------gaaattgcaacccctggttctatagtttttagttgtgatttatt--actatg |
259 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | || ||||||| |||||||||| ||||||||||||||||| | |||| |
|
|
| T |
29183063 |
aaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaagtgcaagtgcaaccgctggttctat----tttagttgtgatttattttagtatg |
29182968 |
T |
|
| Q |
260 |
ataagcatcttttaccttcaaagcaccaatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
334 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29182967 |
ttaagcatcttttaccttcaaagcactgatgaatgattgtgtttcatagattgatggaaacctcatagcaaactt |
29182893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University