View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14382_high_11 (Length: 319)
Name: NF14382_high_11
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_high_11 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 144 - 319
Target Start/End: Complemental strand, 36956548 - 36956373
Alignment:
| Q |
144 |
aatgattaacattttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatga |
243 |
Q |
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| T |
36956548 |
aatgaataacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatga |
36956449 |
T |
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| Q |
244 |
tggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgcc |
319 |
Q |
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| T |
36956448 |
tggaaggaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgcc |
36956373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 36956648 - 36956542
Alignment:
| Q |
1 |
atattggtcaaaatagacacacaattacatctcacacttacatacacacgaaaagggatacataaagataattaagtggggctaacttattctatgatcc |
100 |
Q |
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| T |
36956648 |
atattggtcaaaatagacacacaattacatctcacacttacatacacacaaaaagggatacataaagataattaagtggggctaacttattcaatgatct |
36956549 |
T |
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| Q |
101 |
aatgaat |
107 |
Q |
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| T |
36956548 |
aatgaat |
36956542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 315
Target Start/End: Complemental strand, 36935681 - 36935523
Alignment:
| Q |
157 |
ttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaaga |
256 |
Q |
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| T |
36935681 |
ttgatcaggtttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaaga |
36935582 |
T |
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| Q |
257 |
agcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatt |
315 |
Q |
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| T |
36935581 |
agcacatataacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacatt |
36935523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 191 - 319
Target Start/End: Complemental strand, 36948425 - 36948297
Alignment:
| Q |
191 |
aaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaa |
290 |
Q |
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| T |
36948425 |
aaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaa |
36948326 |
T |
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| Q |
291 |
ttagagccataaccagaaacacatttgcc |
319 |
Q |
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| T |
36948325 |
tcaatgtcataaccagaaacacatttgcc |
36948297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 158 - 317
Target Start/End: Original strand, 12493290 - 12493449
Alignment:
| Q |
158 |
tgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaa |
257 |
Q |
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| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
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| Q |
258 |
gcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttg |
317 |
Q |
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| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttg |
12493449 |
T |
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