View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14382_high_3 (Length: 613)
Name: NF14382_high_3
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 54702236 - 54702589
Alignment:
| Q |
14 |
acaagttcataaactgaactctgtttaataattgaaacagctcctcatccagaaaatatcttccattatcgataatctacaggattggaaaattgatgat |
113 |
Q |
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| T |
54702236 |
acaagttcataaactgaactctgtttaataattgaaacagctcctcatccagaaaatatcttccattatcgataatctacaggattggaaaattgatgat |
54702335 |
T |
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| Q |
114 |
taaggtttaagaaggataggtgcatcgaaagcgttgcaaggcacacagtggcaaggcatatgaggaagttcttcat-----gtctcccttgtgattccat |
208 |
Q |
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| T |
54702336 |
taaggtttaagaaggataggtgcatcgaaagcgttgcaaggca---------------tatgaggaagttcttcatgtcatgtctcccttgtgattccat |
54702420 |
T |
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| Q |
209 |
tggattctcaatatgaaaacaaaactgagatcagaatcaatatatgaatataatatagttgcactgcacactcattgtgttacacatttaaatatataga |
308 |
Q |
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| T |
54702421 |
tggattctcaatatgaaaacaaaactgagatcagaatcaatatatgaatataatataattgcactgcacactcattgtgttacacatttaaatatataga |
54702520 |
T |
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| Q |
309 |
atgaaatgctatagaaaaaccagagagataaacacgttactgacggtatttcagcaattttagcacatg |
377 |
Q |
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| T |
54702521 |
atgaaatgctatcgaaaaaccagagagataaacacgttaccgacagtatttcagcaattttagcacatg |
54702589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 462 - 603
Target Start/End: Original strand, 54702661 - 54702802
Alignment:
| Q |
462 |
taaacatgcaatatgcatttgaatttatttatttttcaaaactgtgtatctctagatgaagcttgaacactacttctgcacccagtatcagtgcattttc |
561 |
Q |
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| T |
54702661 |
taaacatgcaatatgcatttgaatttatttatttttcaaaactgtgtatctctagatgaagcttgaacactacttctgcacccagtatcagtgcattttc |
54702760 |
T |
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| Q |
562 |
catttctgaatcatcgtttagctgatgtacacaccccctttg |
603 |
Q |
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| T |
54702761 |
catttctgaatcatcgtttagctgatatacacaccccctttg |
54702802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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