View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14382_low_10 (Length: 353)

Name: NF14382_low_10
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14382_low_10
NF14382_low_10
[»] chr6 (2 HSPs)
chr6 (7-207)||(7599504-7599704)
chr6 (278-353)||(7599349-7599424)
[»] chr4 (2 HSPs)
chr4 (7-207)||(28462818-28463018)
chr4 (278-353)||(28463098-28463173)
[»] chr5 (4 HSPs)
chr5 (2-207)||(19610746-19610950)
chr5 (125-248)||(3533964-3534090)
chr5 (275-353)||(3533862-3533941)
chr5 (205-250)||(19610683-19610728)
[»] chr2 (3 HSPs)
chr2 (7-207)||(45401602-45401796)
chr2 (278-353)||(45401438-45401513)
chr2 (205-250)||(45401539-45401584)
[»] chr3 (2 HSPs)
chr3 (2-250)||(23361152-23361385)
chr3 (278-307)||(23361097-23361126)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 7599704 - 7599504
Alignment:
Q  7 aatggaatgctgatgaatcaagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcaaggttgtgaagagagaaagaacgttaatgt 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7599704 aatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagagagaaagaacgttaatgt 7599605  T
Q  107 ggtgaatagctatgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtgacgacgatgatgcgtgacggtggtga 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  7599604 ggtgaatagctctgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtggcgacgatgatgagtgacggtggtga 7599505  T
Q  207 t 207  Q
    |    
T  7599504 t 7599504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 7599424 - 7599349
Alignment:
Q  278 tgagttatcactgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttatt 353  Q
    |||||||||||||||||||||||||||||| ||       ||||||||||| ||||||||||||||||||||||||    
T  7599424 tgagttatcactgaagtgttggtaacatttacctttttttatttgttcaaaaagaaatatagagtaacattttatt 7599349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 28462818 - 28463018
Alignment:
Q  7 aatggaatgctgatgaatcaagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcaaggttgtgaagagagaaagaacgttaatgt 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28462818 aatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgtgaagagagaaagaacgttaatgt 28462917  T
Q  107 ggtgaatagctatgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtgacgacgatgatgcgtgacggtggtga 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  28462918 ggtgaatagctctgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtggcgacgatgatgagtgacggtggtga 28463017  T
Q  207 t 207  Q
    |    
T  28463018 t 28463018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 28463098 - 28463173
Alignment:
Q  278 tgagttatcactgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttatt 353  Q
    |||||||||||||||||||||||||||||| ||       ||||||||||| ||||||||||||||||||||||||    
T  28463098 tgagttatcactgaagtgttggtaacatttacctttttttatttgttcaaaaagaaatatagagtaacattttatt 28463173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 19610950 - 19610746
Alignment:
Q  2 caacaaatggaatgctgatgaatcaagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcaaggttgtgaagagagaaagaacgtt 101  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||    
T  19610950 caacgaatggaatgctgatgaatcgagctatgaattgacgttgtgaattgaacgaagaatcgaagtgattattcgaggttgtgaagagagaaaga-catt 19610852  T
Q  102 aatgtggtgaatagctatgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtgacgacgatgatgcgtgacggt 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19610851 aatgtggtgaatagctctgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtgacgacgatgatgcgtgacggt 19610752  T
Q  202 ggtgat 207  Q
    ||||||    
T  19610751 ggtgat 19610746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 3534090 - 3533964
Alignment:
Q  125 tgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtgacgacgatgatg----cgtgacggtggtgattgattgttgtcgt 220  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||  | |||||     | |||||||||||||||||||||| ||    
T  3534090 tgtgatcgattagttgtttgtggtcgagaaaagaaaactgaactctgagagacgtgacggtggtgatgtggcggcgacggtggtgattgattgttgt-gt 3533992  T
Q  221 cgattcattttgatgggtgagatttttg 248  Q
     ||||||||||||| |||||||||||||    
T  3533991 tgattcattttgatcggtgagatttttg 3533964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 3533941 - 3533862
Alignment:
Q  275 ttatgagttatc-actgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttatt 353  Q
    |||||||||||| ||||||||||||||||||||| ||       ||||||| ||| ||||||||||||||||||||||||    
T  3533941 ttatgagttatccactgaagtgttggtaacattttcctttttttatttgttaaaaaagaaatatagagtaacattttatt 3533862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 19610728 - 19610683
Alignment:
Q  205 gattgattgttgtcgtcgattcattttgatgggtgagatttttggt 250  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  19610728 gattgattgttgtcatcgattcattttgatcggtgagatttttggt 19610683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 45401796 - 45401602
Alignment:
Q  7 aatggaatgctgatgaatcaagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcaaggttgtgaagagagaaagaacgttaatgt 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  45401796 aatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcaaagtgattattcgaggttgtgaagagagaaagaacgttaatgt 45401697  T
Q  107 ggtgaatagctatgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtgacgacgatgatgcgtgacggtggtga 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||||    
T  45401696 ggtgaatagctctgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaatt------ggcgtgacgacgatgatgcatgacggtggtga 45401603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 45401513 - 45401438
Alignment:
Q  278 tgagttatcactgaagtgttggtaacatttcccnnnnnnnatttgttcaaacagaaatatagagtaacattttatt 353  Q
    |||||||||||||||||||||||||||||| ||       ||||||||||| ||||||||||||||||||||||||    
T  45401513 tgagttatcactgaagtgttggtaacatttaccttgttttatttgttcaaaaagaaatatagagtaacattttatt 45401438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 45401584 - 45401539
Alignment:
Q  205 gattgattgttgtcgtcgattcattttgatgggtgagatttttggt 250  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  45401584 gattgattgttgtcgtcgattcattttgatcggtgagatttttggt 45401539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 23361385 - 23361152
Alignment:
Q  2 caacaaatggaatgctgatgaatcaagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcaaggttgtgaagagagaaagaacgtt 101  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23361385 caacgaatggaatgctgatgaatctagctatgaattgacgttgtgacttgaacgaagaatcgaagtgattattcgaggttgtgaagagagaaagaacgtt 23361286  T
Q  102 aatgtggtgaatagctatgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcgtgacgacgatgatgcgtgacggt 201  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               | || |||    
T  23361285 aatgtggtgaatagctctgcttctgtgatcgatttgttgtttgtggtcgagaaaagaaaactgaattctgagaggcg---------------gcgatggt 23361201  T
Q  202 ggtgattgattgttgtcgtcgattcattttgatgggtgagatttttggt 250  Q
    || ||||||| |||||||||||||||||||||| |||||||||||||||    
T  23361200 ggcgattgatcgttgtcgtcgattcattttgatcggtgagatttttggt 23361152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Complemental strand, 23361126 - 23361097
Alignment:
Q  278 tgagttatcactgaagtgttggtaacattt 307  Q
    ||||||||||||||||||||||||||||||    
T  23361126 tgagttatcactgaagtgttggtaacattt 23361097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University