View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14382_low_17 (Length: 240)
Name: NF14382_low_17
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_low_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 56043899 - 56043688
Alignment:
| Q |
20 |
aaccattaacatataagttatacaaatatttatttgattttgggttatacacccaaacataaacaattgcctgcaattataaactaattatacattctgc |
119 |
Q |
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| T |
56043899 |
aaccattaacatataagttatacaaatatttatttgattttgggttatacacccaaacataaacaattgcctgcaattataaactaattatacattctgc |
56043800 |
T |
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| Q |
120 |
atcttcagtttaataataatctaacaattatctttgcgtttttaatttaacataaaaacaagtaaatcaaggaaaggagaattattttctttgaccaaaa |
219 |
Q |
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| T |
56043799 |
atcttcagtttaataataatctaacaattatctttgcgtttttaatttaacataaaaa---------caaggaaaggagaattattttctttgaccaaaa |
56043709 |
T |
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| Q |
220 |
aacctttgcaataaatatttt |
240 |
Q |
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| T |
56043708 |
aacctttgcaataaatatttt |
56043688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 47294226 - 47294151
Alignment:
| Q |
58 |
tttgggttatacacccaaacataaacaattgcctgcaattataaactaattatacattctgcatcttcagtttaat |
133 |
Q |
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| T |
47294226 |
tttggattatacacccaaagaaaaacaattgcctgcaattataaactaattacaagctctgcatctttagtttaat |
47294151 |
T |
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