View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14382_low_2 (Length: 616)
Name: NF14382_low_2
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 158 - 601
Target Start/End: Complemental strand, 40108865 - 40108435
Alignment:
| Q |
158 |
tattgggcgttggtgatggaattttagcaacacaactcagcgttttgctagcaatactatttaagcacgacacggtatacaaatgctattattacatttc |
257 |
Q |
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| T |
40108865 |
tattgggcgttggtgatggaattttagcaacacaactcagcgttttgctagcaatactatttaagcacgacacggtatacaaatgctattattacatttc |
40108766 |
T |
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| Q |
258 |
aaaactcaaatcatgtacaattaacatggatttatcgcaagtttgtggaatcacatagagcaaatatatgattactttcaacgaagttacggtgaagtcg |
357 |
Q |
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| T |
40108765 |
aaaactcaaatcatgtacaagtaacatggatttattgcaagtttgtgaaa-------------atatatgattactttcaacaaagttacgttgaagtcg |
40108679 |
T |
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| Q |
358 |
tgatttcatcaaactcgtagtaatttcaaatatgcattgagctatctattatgtgaagtttatgttactttgtggtgtaggaaggggcttttgcacagtt |
457 |
Q |
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| T |
40108678 |
tgatttcatcaaactcgtagtaatttcaaatatgcattgagctatctattatgtgaagtttatgttactttgtggtgtaggaaggggcttttgcacagtt |
40108579 |
T |
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| Q |
458 |
gaagatatggcaaagtgctacgattgctatggtgttctttttggcacctcacatctcgttccaaacattcgtcgtgatcatgttggtttccctatgtttg |
557 |
Q |
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| T |
40108578 |
gaagatatggcaaagtgctacgattgctatggtgttctttttggcacctcacatctcgttccaaacattcgtcgtgatcatgttggtttccctatgtttg |
40108479 |
T |
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| Q |
558 |
tcattatgtagttttctatggttgactatcaaggtggggaaaac |
601 |
Q |
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| T |
40108478 |
acattatgtagttttctatggttgactatcaaggtggggaaaac |
40108435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 428 - 598
Target Start/End: Complemental strand, 40146512 - 40146342
Alignment:
| Q |
428 |
tgtggtgtaggaaggggcttttgcacagttgaagatatggcaaagtgctacgattgctatggtgttctttttggcacctcacatctcgttccaaacattc |
527 |
Q |
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| T |
40146512 |
tgtggtgcaggaaggggcttttgcacagctaaagatatggcaaagcgctacaattgctgtcgtgttctttttggccccgtacatttcgttccaagcagtt |
40146413 |
T |
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| Q |
528 |
gtcgtgatcatgttggtttccctatgtttgtcattatgtagttttctatggttgactatcaaggtggggaa |
598 |
Q |
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| T |
40146412 |
accataatcatgttggttttactatgcttgtcattctgtagttttctatggttggctctcaaggtggggaa |
40146342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 598
Target Start/End: Complemental strand, 40153144 - 40152946
Alignment:
| Q |
400 |
tatctattatgtgaagtttatgttactttgtggtgtaggaaggggcttttgcacagttgaagatatggcaaagtgctacgattgctatggtgttcttttt |
499 |
Q |
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| T |
40153144 |
tatctcttatgtcaaacttatattactttgcggtgcaggaaggggcttttgctcagctaaagatatggcagagcgctaccattgctatggtgttcttttt |
40153045 |
T |
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| Q |
500 |
ggcacctcacatctcgttccaaacattcgtcgtgatcatgttggtttccctatgtttgtcattatgtagttttctatggttgactatcaaggtggggaa |
598 |
Q |
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| T |
40153044 |
ggccccgtacatttcgttccaagcagttatcatggtcatgttgactttactatgcttgtcattctgcagttttttatggttggctctcaaggtggggaa |
40152946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 42487543 - 42487381
Alignment:
| Q |
1 |
tagttgggtcacactgctctcagtggagccaaataatttgtacaaatggtccattttgatatcatagaactttagagatgcagatgtggatcgttagttc |
100 |
Q |
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| T |
42487543 |
tagttgggtcacactgctctcagtggagccaaataatttgtacaaatggtccattttgatatcatagaactttagagatgcagatgtggatcgttagttc |
42487444 |
T |
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| Q |
101 |
ttcaatgtgaggatgatagaagttcttctttttgtggacccttaaggtacataattttattgg |
163 |
Q |
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| T |
42487443 |
ttcaatgtgaggatgatagaagttcttcttttcgtggacccttaaggtacataattttattgg |
42487381 |
T |
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