View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14382_low_4 (Length: 532)
Name: NF14382_low_4
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 5190603 - 5190063
Alignment:
| Q |
1 |
tttatgtctctaaattctaattttattgtgacatgaatgaatgtaagggg-------------atgagaattaatataccttggataaggggaacctttg |
87 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
5190603 |
tttatgtctctaaattctaattttattgtgacatgaatgaatgtaaaggggatgagattgagaatgagaaataatataccttggataaggggaacctttg |
5190504 |
T |
|
| Q |
88 |
atgggtttctgaccatactttctccaagcccatgaatcagacggtggagtattagtcccttcaacattcttcattggaatctctactacccttttcttta |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5190503 |
atgggtttctgaccatactttctccaagcccatgaatcagacggtggagtattagtcccttcaacattcttcattggaatctctactactcttttcttta |
5190404 |
T |
|
| Q |
188 |
tacctcgcctattatacattaattaacatgcaaaattattttctacagatcaatagttgagatgt---------------atgcatgtagtacactcaaa |
272 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5190403 |
tacctcgcctattatacattaattaacatggaaaattattttctacagatcaatagttgagatgttgataattcataatgatgcatgtagtacactcaaa |
5190304 |
T |
|
| Q |
273 |
ttttgcttaaaaggaatctctatagctcaaaagctaactattaatattgatggaaaatgatatttaccttttagcagaagaagagagtgatgatctttcc |
372 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5190303 |
ttttgcttaaaaggaatttctatagctcaaaagctaactattaatattgatggaaaatgatatttaccttttagcagaagaagagagtgatgatctttcc |
5190204 |
T |
|
| Q |
373 |
atgttagagggaattgaatcaacaatgttttattcactctcacagtcacataagcttgtaaatccactgtcaatttcgagctatagttaatcttgaccct |
472 |
Q |
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| T |
5190203 |
atgttagagggaattgaatcaacaatgttttattcactctcacagtcacataagcttgtaaatccactgtcaatttctagctatagttaatcttgaccct |
5190104 |
T |
|
| Q |
473 |
taatcactcttaaaaggtgtcggtgatatgatatttataaa |
513 |
Q |
| |
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| T |
5190103 |
taatcactcttaaaaggtgtcggtgatatgatatttataaa |
5190063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 35205472 - 35205543
Alignment:
| Q |
64 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtgga |
135 |
Q |
| |
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| T |
35205472 |
taccttggataaggggagcctttgatgggcttttgaccgtactttctccaagcccatgaatccgacggtgga |
35205543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 12166315 - 12166370
Alignment:
| Q |
64 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaagccca |
119 |
Q |
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| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccatattttctccaagccca |
12166370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 36065056 - 36064978
Alignment:
| Q |
63 |
ataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtggagtatta |
141 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||| |||||| |
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| T |
36065056 |
atacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaaggtggtgtatta |
36064978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 39255755 - 39255806
Alignment:
| Q |
64 |
taccttggataaggggaacctttgatgggtttctgaccatactttctccaag |
115 |
Q |
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|||||||||| ||| |||||||| || |||||||||||||| |||||||||| |
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| T |
39255755 |
taccttggatgaggtgaacctttaataggtttctgaccatattttctccaag |
39255806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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