View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14382_low_6 (Length: 406)
Name: NF14382_low_6
Description: NF14382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14382_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 3810601 - 3810919
Alignment:
| Q |
19 |
ctatataaccaagatgggatacctactcaattaagttgtgattctgagctgattcaagaagtcacagattatcttcaaagttttaatgcatcattagcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3810601 |
ctatataaccaagatgggatacctactcaattaagttgtgattctgaactgattcaagaagtcacatattatcttcaaagttttaatgcatcattagcat |
3810700 |
T |
|
| Q |
119 |
gattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcacc-nnnnnnnnncctagtttcgaactttatagagctagtttgtcatttttaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3810701 |
gattacaatgagaatgcaatgcaagtgttttgtgcttgctttgttcaccttttttttttcctagtttcgaactttatagagctagtttgtcatttttaag |
3810800 |
T |
|
| Q |
218 |
ggattttgttgttcttaggatttaatccttgctactttcattattaatgatattgttttcaccttnnnnnnnttgcagaagtgttactccaatttgattt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3810801 |
ggattttgttgttcttaggatttaatccttgctactttcattattaatgatattgttttcaccttaaaaaaattgcagaagtgttactccaatttgattt |
3810900 |
T |
|
| Q |
318 |
atgcgcttcaagaatcaag |
336 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
3810901 |
atacgcttcaagaatcaag |
3810919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University